[Home] | [Total List]

[174979_at] cAMP-regulated phosphoprotein

Description CEK114G3R_rc /REP_DB=TREMBL Accession /GB=D73148 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk114g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 78      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 58      6grp_total > 96      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3985
1 2 3 4 range
A 2646.6
(-2.3)
P 		2387.7
(-2.9)
P 		2319.2
(-3)
P 		5181.7
(3)
P 		2863
B 2530.3
(-2.3)
P 		2308.6
(-2.7)
P 		2168.7
(-3)
P 		5389
(3)
P 		3220
C 2465
(-2.8)
P 		2307.9
(-3)
P 		2387.2
(-2.9)
P 		6153.3
(3)
P 		3845
avr 2547.3
(-2.5) 		2334.7
(-2.9) 		2291.7
(-3) 		5574.7
(3) 		3283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1981
1 2 3 4 5 6 range
A 2689.5
(0.9)
P 		2044.5
(-1.9)
P 		1788.8
(-3)
P 		2265.1
(-0.9)
P 		2965.2
(2.1)
P 		3160.2
(3)
P 		1371
B 1997.6
(-0.9)
P 		1889.5
(-1.2)
P 		1307.9
(-3)
P 		2571.3
(0.8)
P 		2377
(0.2)
P 		3288.9
(3)
P 		1981
C 2238
(-0.7)
P 		1684.1
(-3)
P 		2120.2
(-1.2)
P 		2420.3
(0.1)
P 		2526.7
(0.5)
P 		3117.7
(3)
P 		1434
avr 2308.4
(-0.6) 		1872.7
(-2.4) 		1739
(-3) 		2418.9
(-0.2) 		2623
(0.7) 		3188.9
(3) 		1450
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 646
1 2 3 4 range
A 963.6
(3)
P 		518.3
(-3)
P 		606.3
(-1.8)
P 		758.5
(0.2)
P 		445
B 806.9
(-0.2)
P 		570.2
(-2.4)
P 		502.5
(-3)
P 		1148.4
(3)
P 		646
C 816
(-0.6)
P 		663.5
(-3)
P 		832
(-0.3)
P 		1037.5
(3)
P 		374
avr 862.2
(1.2) 		584
(-3) 		646.9
(-2.1) 		981.5
(3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 495.8
(-1.7)
P 		727.1
(1)
P 		389.6
(-3)
P 		574.5
(-0.8)
P 		894.8
(3)
P 		769.4
(1.5)
P 		505
B 695.1
(-0.5)
P 		629
(-0.9)
P 		317.6
(-3)
P 		681.1
(-0.6)
P 		965.8
(1.3)
P 		1226.4
(3)
P 		909
C 829.5
(0.7)
P 		513.9
(-2.7)
P 		539.6
(-2.4)
P 		486.7
(-3)
P 		817.6
(0.6)
P 		1043.7
(3)
P 		557
avr 673.5
(-0.4) 		623.3
(-0.9) 		415.6
(-3) 		580.8
(-1.3) 		892.7
(1.8) 		1013.2
(3) 		598
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20336
Sequence Type Exemplar sequence
Representative Public ID CEK114G3R NCBI
Target Description CEK114G3R_rc /REP_DB=TREMBL Accession /GB=D73148 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk114g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060208 NCBI Caenorhabditis elegans K10C3.2 (K10C3.2) mRNA, complete cds. 11/11 None
K10C3.2.1 ENSEMBL cdna:known chromosome:CEL140:I:9858152:9859914:-1 gene:K10C3.2 11/11 A 
K10C3.2.2 ENSEMBL cdna:known chromosome:CEL140:I:9858152:9859912:-1 gene:K10C3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9858103-9858489(-) 100.0 100.0
Public Domain and Genome References
Gene Title cAMP-regulated phosphoprotein
Ensembl K10C3.2
Entrez Gene 172837 Entrez gene
SwissProt Q9XU56 EMBL-EBI
WormBase CE19999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05775 Hypothetical protein K10C3.2 [Caenorhabditis elegans] ref|NP_492609.1| K10C3.2 [Caenorhabditis elegans] 2.0E-58
blast CAE60264 Hypothetical protein CBG03840 [Caenorhabditis briggsae] 3.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR006760 EMBL-EBI cAMP-regulated phosphoprotein/endosulfine conserved region 2.3E-15
Sequence
Target Sequence 
>C. ELEGANS:174979_AT
gaaaatcgcaaaccaatccaatcataatcatcatcatgaaaaggctgtttcttgctattt
ctttctctctcataagtcacattgaaagcacattttccattctctcaacaccttcccaac
ctatttctgttcccttttctatcagttgctgtcagctatcgtttccaaacaggtattcaa
tatacacaaccactgttctgtcgatccgcacaacaattctctctaagttttacatcaatt
gttctttaaaaactctgaaaatgatgttctgtagttagcctcttttcaaacacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATCGCAAACCAATCCAATCAT 576 353 20 Antisense
AGGCTGTTTCTTGCTATTTCTTTCT 427 53 61 Antisense
TTCTTTCTCTCTCATAAGTCACATT 300 691 78 Antisense
TGAAAGCACATTTTCCATTCTCTCA 339 573 102 Antisense
TATTTCTGTTCCCTTTTCTATCAGT 201 663 141 Antisense
TTCCCTTTTCTATCAGTTGCTGTCA 120 697 149 Antisense
TTGCTGTCAGCTATCGTTTCCAAAC 559 701 165 Antisense
ATACACAACCACTGTTCTGTCGATC 255 25 201 Antisense
ATCCGCACAACAATTCTCTCTAAGT 290 39 223 Antisense
GATGTTCTGTAGTTAGCCTCTTTTC 90 409 282 Antisense
TAGTTAGCCTCTTTTCAAACACTTT 93 653 291 Antisense
Sequence Source Affymetrix Proprietary Database