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[174978_at]

Description CEK113H9R_rc /REP_DB=TREMBL Accession /GB=D73093 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk113h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 12      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 14      6grp_total > 13      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3547
1 2 3 4 range
A 5458.7
(3)
P 		3812.3
(-0.7)
P 		3385.9
(-1.6)
P 		2764.4
(-3)
P 		2694
B 5592.9
(3)
P 		3791.7
(-0)
P 		2045.8
(-3)
P 		3352.4
(-0.8)
P 		3547
C 5436.1
(3)
P 		3809.7
(-0.2)
P 		3421.3
(-1)
P 		2392.6
(-3)
P 		3044
avr 5495.9
(3) 		3804.6
(-0.8) 		2951
(-2.7) 		2836.5
(-3) 		2659

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3104
1 2 3 4 5 6 range
A 4826
(2.9)
P 		4866.7
(3)
P 		3379.7
(-0.5)
P 		3359.9
(-0.5)
P 		3586.9
(0)
P 		2293.8
(-3)
P 		2573
B 4441.4
(2.1)
P 		4856.8
(3)
P 		4378.2
(2)
P 		4057.3
(1.3)
P 		2692.5
(-1.6)
P 		2046.1
(-3)
P 		2811
C 5150.4
(3)
P 		4318.7
(1.3)
P 		4845.3
(2.4)
P 		3842.7
(0.4)
P 		3571.3
(-0.2)
P 		2176.2
(-3)
P 		2974
avr 4805.9
(3) 		4680.7
(2.7) 		4201.1
(1.6) 		3753.3
(0.6) 		3283.6
(-0.5) 		2172
(-3) 		2634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1584
1 2 3 4 range
A 1987.5
(3)
P 		827.6
(-1.4)
P 		885.1
(-1.2)
P 		404.7
(-3)
P 		1583
B 1783.5
(3)
P 		936.5
(-0.9)
P 		474.1
(-3)
P 		714.4
(-1.9)
P 		1309
C 1799.5
(3)
P 		1095.3
(-0)
P 		1192.4
(0.4)
P 		403.4
(-3)
P 		1396
avr 1856.8
(3) 		953.1
(-1) 		850.5
(-1.5) 		507.5
(-3) 		1349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1351
1 2 3 4 5 6 range
A 889.6
(-1.3)
P 		1730.8
(3)
P 		736
(-2.1)
P 		852.2
(-1.5)
P 		1082.4
(-0.3)
P 		558.5
(-3)
P 		1172
B 1545.4
(2.5)
P 		1616.6
(3)
P 		1063.2
(-0.9)
P 		1074.6
(-0.8)
P 		1093.9
(-0.7)
P 		763
(-3)
P 		854
C 1909
(3)
P 		1317.8
(-0)
P 		1233.2
(-0.4)
P 		772.8
(-2.8)
P 		1155.6
(-0.8)
P 		728.5
(-3)
P 		1181
avr 1448
(2.3) 		1555.1
(3) 		1010.8
(-0.7) 		899.9
(-1.5) 		1110.6
(-0.1) 		683.3
(-3) 		872
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22456
Sequence Type Exemplar sequence
Representative Public ID CEK113H9R NCBI
Target Description CEK113H9R_rc /REP_DB=TREMBL Accession /GB=D73093 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk113h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029589 NCBI Caenorhabditis elegans K03C7.2a (DNA-binding) mRNA, complete cds. 11/11 None
K03C7.2a ENSEMBL cdna:known chromosome:CEL140:X:3816840:3826943:-1 gene:K03C7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180670 2 1 NM_001029589 174978_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3816915-3817164(-) 100.0 100.0
Public Domain and Genome References
Ensembl K03C7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81139 Forkhead transcription factor family protein 9, isoform a [Caenorhabditis elegans] ref|NP_001024760.1| K03C7.2a [Caenorhabditis elegans] 1.0E-128
blast AAP68936 Forkhead transcription factor family protein 9, isoform b [Caenorhabditis elegans] ref|NP_001024761.1| K03C7.2b [Caenorhabditis elegans] 1.0E-116
blast CAE68489 Hypothetical protein CBG14292 [Caenorhabditis briggsae] 2.0E-83
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 2.00000000634215E-28
Pfam IPR001766 EMBL-EBI Fork head transcription factor 1.2E-25
Sequence
Target Sequence 
>C. ELEGANS:174978_AT
tattttgttctgatacctaaaccgtgtgaaacccgtgctaccggttcaatgcagcaccac
catcaagaaaatatttgattctgcaccctacaatatccaatcaacttttctttaccacac
aattaatgttttttcatcatctttgtccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTGTTCTGATACCTAAACCGT 209 663 47 Antisense
GTTCTGATACCTAAACCGTGTGAAA 674 439 53 Antisense
TGCTACCGGTTCAATGCAGCACCAC 147 579 82 Antisense
TTCAATGCAGCACCACCATCAAGAA 590 685 91 Antisense
GCAGCACCACCATCAAGAAAATATT 531 313 97 Antisense
AAAATATTTGATTCTGCACCCTACA 632 133 114 Antisense
TTCTGCACCCTACAATATCCAATCA 149 695 125 Antisense
TATCCAATCAACTTTTCTTTACCAC 671 655 140 Antisense
TCAACTTTTCTTTACCACACAATTA 162 629 147 Antisense
ACCACACAATTAATGTTTTTTCATC 413 83 160 Antisense
ATGTTTTTTCATCATCTTTGTCCCT 504 47 172 Antisense
Sequence Source Affymetrix Proprietary Database