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[174976_at]

Description CEK023EXR_rc /REP_DB=TREMBL Accession /GB=D32919 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk23e10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 46      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 77      6grp_total > 36      4grp_total > 54      6grp_highest_sub > Cu      6grp_cgc > 25      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 978
1 2 3 4 range
A 1417.5
(3)
P 		1089.7
(-0.6)
P 		1043
(-1.1)
P 		871.9
(-3)
P 		546
B 1649.2
(3)
P 		983.3
(-3)
P 		1061.9
(-2.3)
P 		1040.7
(-2.5)
P 		666
C 1445.9
(3)
P 		1004.3
(-0.4)
P 		1065.3
(0.1)
P 		671.6
(-3)
P 		774
avr 1504.2
(3) 		1025.8
(-1.5) 		1056.7
(-1.2) 		861.4
(-3) 		643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 1369.6
(2.8)
P 		1379.9
(3)
P 		1043.8
(-1.9)
P 		969.5
(-3)
P 		1278
(1.5)
P 		1286.6
(1.6)
P 		410
B 1462.1
(2.5)
P 		1432.4
(2.1)
P 		1456.7
(2.4)
P 		1504.5
(3)
P 		1001.6
(-3)
P 		1275
(0.3)
P 		503
C 1342.7
(1.3)
P 		1305.7
(0.6)
P 		1139.5
(-3)
P 		1294.6
(0.3)
P 		1140.4
(-3)
P 		1420.1
(3)
P 		281
avr 1391.5
(3) 		1372.7
(2.6) 		1213.3
(-1.3) 		1256.2
(-0.2) 		1140
(-3) 		1327.2
(1.5) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 516.1
(3)
P 		236.5
(-1.3)
P 		272.7
(-0.8)
P 		127.6
(-3)
P 		389
B 525.9
(3)
P 		242.9
(-2.6)
P 		246.1
(-2.5)
P 		221.8
(-3)
P 		304
C 478.6
(3)
P 		288.8
(-0.1)
P 		371.3
(1.2)
P 		113.2
(-3)
P 		365
avr 506.9
(3) 		256.1
(-1.3) 		296.7
(-0.6) 		154.2
(-3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 252.5
(-2.4)
P 		490.7
(3)
P 		227.3
(-3)
P 		245.9
(-2.6)
P 		385.6
(0.6)
P 		313.2
(-1)
P 		263
B 508.7
(3)
P 		476.8
(1.8)
P 		353.7
(-3)
P 		398.5
(-1.3)
P 		407
(-0.9)
P 		475.4
(1.7)
P 		155
C 497.7
(3)
P 		398.4
(0.5)
P 		290
(-2.2)
P 		260.3
(-3)
P 		369
(-0.3)
P 		475.4
(2.4)
P 		237
avr 419.6
(1.7) 		455.3
(3) 		290.3
(-3) 		301.6
(-2.6) 		387.2
(0.5) 		421.3
(1.8) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20265
Sequence Type Exemplar sequence
Representative Public ID CEK023EXR NCBI
Target Description CEK023EXR_rc /REP_DB=TREMBL Accession /GB=D32919 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk23e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026287 NCBI Caenorhabditis elegans Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) (tat-5) mRNA, complete cds. 11/11 None
F36H2.1b ENSEMBL cdna:known chromosome:CEL140:I:9242298:9254048:-1 gene:F36H2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172748 2 1 NM_001026287 174976_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9242255-9242651(-) 100.0 100.0
Public Domain and Genome References
Ensembl F36H2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92377 Hypothetical protein F36H2.1b [Caenorhabditis elegans] emb|CAD92394.1| Hypothetical protein F36H2.1b [Caenorhabditis elegans] ref|NP_001021458.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) [Caenorhabditis elegans] 0.0
blast CAB03079 Hypothetical protein F36H2.1a [Caenorhabditis elegans] emb|CAA16284.2| Hypothetical protein F36H2.1a [Caenorhabditis elegans] ref|NP_001021457.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) [Caenorhabditis elegans] 0.0
blast CAE70374 Hypothetical protein CBG16933 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A8A2_HUMAN (Q9NTI2) Potential phospholipid-transporting ATPase IB (EC 3.6.3.1) (ATPase class I type 8A member 2) (ML-1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 3.4E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021458.1 10 75-97,107-129,314-333,343-363,834-856,861-883,913-935,939-958,965-987,997-1019
F36H2.1b 10 75-97,107-129,314-333,343-363,834-856,861-883,913-935,939-958,965-987,997-1019
Sequence
Target Sequence 
>C. ELEGANS:174976_AT
gctttactagtttttttgcaattcttcccccactcgcaacggtttttagtgctgaaaatg
ataacttctcgccaatttccttccatttcttcggtatttcactgtgtgatagattgaata
gacatttttattgacccgcatatcacttttcttttgctgttttcttagaaatctagattc
aaaaaatatctttgaattctaattctttttaaattctcgaaatatcttttttcgttggac
tttccaaactctaatgcgagtaaccaatccacccgttcttccctgtcaaattcaacattt
cctcggattttgtgtctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTACTAGTTTTTTTGCAATTCT 333 305 37 Antisense
CCCACTCGCAACGGTTTTTAGTGCT 147 259 65 Antisense
AATGATAACTTCTCGCCAATTTCCT 649 161 93 Antisense
TTCCTTCCATTTCTTCGGTATTTCA 672 699 113 Antisense
ATAGACATTTTTATTGACCCGCATA 509 19 154 Antisense
GACCCGCATATCACTTTTCTTTTGC 99 381 169 Antisense
ATCACTTTTCTTTTGCTGTTTTCTT 71 29 178 Antisense
TGGACTTTCCAAACTCTAATGCGAG 695 547 272 Antisense
CTAATGCGAGTAACCAATCCACCCG 429 227 287 Antisense
CTTCCCTGTCAAATTCAACATTTCC 104 219 314 Antisense
CATTTCCTCGGATTTTGTGTCTTTT 405 215 332 Antisense
Sequence Source Affymetrix Proprietary Database