[Home] | [Total List]

[174975_at]

Description CEK065DXR_rc /REP_DB=TREMBL Accession /GB=D65642 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 42      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 26      6grp_total > 31      4grp_total > 38      6grp_highest_sub > 03_04      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3611
1 2 3 4 range
A 5608.9
(3)
P 		3650.6
(-0.5)
P 		2285.3
(-3)
P 		3860.2
(-0.2)
P 		3324
B 5536.1
(3)
P 		3619.3
(-0.3)
P 		1998.1
(-3)
P 		4166.6
(0.7)
P 		3538
C 5553.9
(3)
P 		3537.2
(-0.8)
P 		2354
(-3)
P 		3304.3
(-1.2)
P 		3200
avr 5566.3
(3) 		3602.4
(-0.5) 		2212.5
(-3) 		3777
(-0.2) 		3354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5906
1 2 3 4 5 6 range
A 5735.2
(0.9)
P 		7132
(3)
P 		6210.2
(1.6)
P 		6391.8
(1.9)
P 		5290.9
(0.3)
P 		3108.1
(-3)
P 		4024
B 4828.5
(-0.3)
P 		6877.7
(2.5)
P 		7212.1
(3)
P 		6701.7
(2.3)
P 		4513.6
(-0.7)
P 		2889.9
(-3)
P 		4322
C 5292.7
(-0.6)
P 		6350.5
(0.5)
P 		8795.7
(3)
P 		6887.9
(1)
P 		4782.7
(-1.1)
P 		2958.1
(-3)
P 		5838
avr 5285.5
(0.1) 		6786.7
(2.2) 		7406
(3) 		6660.5
(2) 		4862.4
(-0.5) 		2985.4
(-3) 		4421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1579
1 2 3 4 range
A 2042.2
(3)
P 		792.5
(-2.1)
P 		597.4
(-2.9)
P 		565.1
(-3)
P 		1477
B 1765.4
(3)
P 		893.9
(-1)
P 		463
(-3)
P 		887.9
(-1)
P 		1302
C 1838.5
(3)
P 		1017
(-0.8)
P 		820.5
(-1.8)
P 		557.2
(-3)
P 		1281
avr 1882
(3) 		901.1
(-1.7) 		627
(-3) 		670.1
(-2.8) 		1255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1780
1 2 3 4 5 6 range
A 1057.2
(-2)
P 		2536.5
(3)
P 		1352.4
(-1)
P 		1621.1
(-0.1)
P 		1596.6
(-0.2)
P 		756.7
(-3)
P 		1780
B 1680.1
(-0)
P 		2289.3
(3)
P 		1751.3
(0.3)
P 		1775
(0.5)
P 		1833.8
(0.7)
P 		1077.6
(-3)
P 		1212
C 1961.8
(1.7)
P 		1937.7
(1.6)
P 		2238.6
(3)
P 		1385.2
(-1.1)
P 		1547.6
(-0.3)
P 		990.3
(-3)
P 		1248
avr 1566.4
(-0.1) 		2254.5
(3) 		1780.8
(0.8) 		1593.8
(-0) 		1659.3
(0.3) 		941.5
(-3) 		1313
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22188
Sequence Type Exemplar sequence
Representative Public ID CEK065DXR NCBI
Target Description CEK065DXR_rc /REP_DB=TREMBL Accession /GB=D65642 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk65d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077226 NCBI Caenorhabditis elegans T14B1.1 (T14B1.1) mRNA, complete cds. 11/11 None
T14B1.1.2 ENSEMBL cdna:known chromosome:CEL140:X:9664427:9667286:-1 gene:T14B1.1 11/11 A 
T14B1.1.1 ENSEMBL cdna:known chromosome:CEL140:X:9664427:9668687:-1 gene:T14B1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9664465-9664792(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14B1.1
Entrez Gene 181181 Entrez gene
SwissProt Q22474 EMBL-EBI
WormBase CE01662 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86862 Hypothetical protein T14B1.1 [Caenorhabditis elegans] ref|NP_509627.1| T14B1.1 [Caenorhabditis elegans] 0.0
blast CAE69774 Hypothetical protein CBG16058 [Caenorhabditis briggsae] 8.0E-13
Sequence
Target Sequence 
>C. ELEGANS:174975_AT
gaagtagggccagtgcttgcacagtgtggaacttctacccaaaaaccgttagccattgtc
ccatttatctctatttaattctacctctcagtttggatcacccttctttacaaatcattt
atttttactgtgactttttgtacaactgattcatgtttcccgcttttttcgatgagattc
tctattatttttgtttttttccgcgcttttatattttgataatcttaaatcctatttcca
cacatccttctaatatttttgaaaacgtaatgttttatctattcttcgtgctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTAGGGCCAGTGCTTGCACAGT 710 335 16 Antisense
TGCACAGTGTGGAACTTCTACCCAA 42 577 33 Antisense
CAAAAACCGTTAGCCATTGTCCCAT 468 191 55 Antisense
CATTGTCCCATTTATCTCTATTTAA 543 217 69 Antisense
AATTCTACCTCTCAGTTTGGATCAC 30 177 92 Antisense
GGATCACCCTTCTTTACAAATCATT 455 511 110 Antisense
GTACAACTGATTCATGTTTCCCGCT 474 461 155 Antisense
GTTTCCCGCTTTTTTCGATGAGATT 222 451 170 Antisense
TTTTTCCGCGCTTTTATATTTTGAT 375 675 211 Antisense
TTTCCACACATCCTTCTAATATTTT 515 669 250 Antisense
ATGTTTTATCTATTCTTCGTGCTTA 644 47 285 Antisense
Sequence Source Affymetrix Proprietary Database