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[174974_s_at]

Description CEK039EYR_rc /REP_DB=TREMBL Accession /GB=D34001 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 57      6grp_total > 04      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2197
1 2 3 4 range
A 2191.7
(-1.6)
P
2236.3
(-1.4)
P
1818.5
(-3)
P
3384
(3)
P
1566
B 2557
(-0.7)
P
2230
(-1.6)
P
1720.3
(-3)
P
3917.5
(3)
P
2197
C 2285.7
(-1.7)
P
2011.6
(-2.8)
P
1959.3
(-3)
P
3469.7
(3)
P
1510
avr 2344.8
(-1.3)
2159.3
(-1.9)
1832.7
(-3)
3590.4
(3)
1758

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1351
1 2 3 4 5 6 range
A 3163.6
(3)
P
2574.3
(-0.1)
P
2021.7
(-3)
P
2095.7
(-2.6)
P
2232
(-1.9)
P
2190.6
(-2.1)
P
1142
B 2556.8
(1.6)
P
2765.4
(3)
P
2052.5
(-1.6)
P
2665.5
(2.4)
P
1840.2
(-3)
P
2047.3
(-1.7)
P
925
C 3187.2
(3)
P
2340.5
(-0.8)
P
2167.9
(-1.5)
P
2620.8
(0.5)
P
2323.7
(-0.8)
P
1836.6
(-3)
P
1351
avr 2969.2
(3)
2560.1
(0.4)
2080.7
(-2.6)
2460.7
(-0.2)
2132
(-2.3)
2024.8
(-3)
944
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 436
1 2 3 4 range
A 798
(3)
P
485.4
(-2.8)
P
475.4
(-3)
P
495.3
(-2.6)
P
323
B 815.4
(2.7)
P
550.8
(-0.9)
P
398.6
(-3)
P
834.8
(3)
P
436
C 756.6
(3)
P
578.4
(-3)
P
682.9
(0.5)
P
585.1
(-2.8)
P
178
avr 790
(3)
538.2
(-2.6)
519
(-3)
638.4
(-0.4)
271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 583.2
(-1.2)
P
915.6
(3)
P
440.3
(-3)
P
531.5
(-1.8)
P
673.5
(-0.1)
P
533.4
(-1.8)
P
475
B 889.6
(2.6)
P
920.5
(3)
P
498.4
(-3)
P
706
(-0)
P
747.6
(0.5)
P
763.4
(0.8)
P
422
C 1181.4
(3)
P
714.2
(-1.3)
P
551.8
(-2.8)
P
527.1
(-3)
P
751.9
(-0.9)
P
614.8
(-2.2)
P
654
avr 884.7
(3)
850.1
(2.5)
496.8
(-3)
588.2
(-1.6)
724.3
(0.5)
637.2
(-0.8)
388
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174974_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20154
Sequence Type Exemplar sequence
Representative Public ID CEK039EYR NCBI
Target Description CEK039EYR_rc /REP_DB=TREMBL Accession /GB=D34001 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059020(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_059020 NCBI Caenorhabditis elegans B0041.2b (B0041.2) mRNA, complete cds. 11/11 None
B0041.2b ENSEMBL cdna:known chromosome:CEL140:I:4655350:4660154:1 gene:B0041.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172076 3 1 NM_059020 174974_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4659757-4660129(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0041.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL11096 Hypothetical protein B0041.2b [Caenorhabditis elegans] ref|NP_491421.1| B0041.2b [Caenorhabditis elegans] 0.0
blast AAC24251 Hypothetical protein B0041.2a [Caenorhabditis elegans] ref|NP_491420.1| B0041.2a [Caenorhabditis elegans] 0.0
blast AAO61448 Hypothetical protein B0041.2c [Caenorhabditis elegans] ref|NP_001020957.1| B0041.2c [Caenorhabditis elegans] 1.0E-141
Sequence
Target Sequence
>C. ELEGANS:174974_S_AT
tttctccaaaattacatccccaaatggacacatcacaagcttaatccaaattcgcctcat
catcatctcgcttttcccgtaaattttactttttaaatttctcatattcactactacaca
tttcgcagttagctttccgacaatttggagcaatatgcgaatttgtagtagatcgcccc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TTTCTCCAAAATTACATCCCCAAAT 649 671 102 Antisense
TACATCCCCAAATGGACACATCACA 581 643 114 Antisense
GACACATCACAAGCTTAATCCAAAT 283 367 128 Antisense
CAAGCTTAATCCAAATTCGCCTCAT 84 187 137 Antisense
TTCTCATATTCACTACTACACATTT 134 693 200 Antisense
CATATTCACTACTACACATTTCGCA 283 215 204 Antisense
TACACATTTCGCAGTTAGCTTTCCG 692 639 216 Antisense
ATTTCGCAGTTAGCTTTCCGACAAT 290 17 221 Antisense
GTTAGCTTTCCGACAATTTGGAGCA 370 445 229 Antisense
CCGACAATTTGGAGCAATATGCGAA 347 203 238 Antisense
ATGCGAATTTGTAGTAGATCGCCCC 145 41 256 Antisense
Sequence Source Affymetrix Proprietary Database