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[174973_at]

Description CEK131D6R_rc /REP_DB=TREMBL Accession /GB=D65119 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk131d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 29      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 502.6
(3)
P 		154.6
(-3)
P 		245.7
(-1.4)
P 		182.7
(-2.5)
P 		348
B 513.5
(3)
P 		232.7
(-2)
P 		179.4
(-3)
P 		264.5
(-1.5)
P 		334
C 497.8
(3)
P 		300.2
(-1)
P 		321
(-0.6)
P 		200.8
(-3)
P 		297
avr 504.6
(3) 		229.2
(-2.7) 		248.7
(-2.3) 		216
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 363.5
(2.5)
P 		383.7
(3)
P 		209.3
(-1.6)
P 		154
(-3)
P 		273.9
(0.1)
P 		234.8
(-0.9)
P 		230
B 474.5
(3)
P 		419.6
(2)
P 		131.3
(-3)
P 		206.6
(-1.7)
P 		257.4
(-0.8)
P 		290.7
(-0.2)
P 		343
C 471.7
(3)
P 		415.9
(2)
P 		156.7
(-2.6)
P 		135
(-3)
P 		245.7
(-1)
P 		318.9
(0.3)
P 		337
avr 436.6
(3) 		406.4
(2.3) 		165.8
(-3) 		165.2
(-3) 		259
(-0.9) 		281.5
(-0.4) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 183
(3)
P 		33.6
(-2.7)
P 		64.2
(-1.6)
P 		26.7
(-3)
P 		156
B 163.8
(3)
P 		57.5
(-2.2)
P 		41.6
(-3)
P 		56.4
(-2.3)
P 		122
C 164.8
(3)
P 		86.3
(-0.6)
P 		111.9
(0.6)
P 		33.9
(-3)
P 		131
avr 170.5
(3) 		59.1
(-2.1) 		72.6
(-1.5) 		39
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 67
(-1.3)
P 		136.4
(3)
P 		45.6
(-2.6)
P 		39.1
(-3)
P 		82.7
(-0.3)
P 		57.2
(-1.9)
P 		97
B 165.1
(3)
P 		139.7
(1.9)
P 		31.9
(-3)
P 		54.7
(-2)
P 		104.6
(0.3)
P 		108.4
(0.4)
P 		133
C 174.8
(3)
P 		126.9
(1.1)
P 		39.9
(-2.5)
P 		27.2
(-3)
P 		79.5
(-0.9)
P 		106.8
(0.2)
P 		148
avr 135.6
(3) 		134.3
(2.9) 		39.1
(-3) 		40.3
(-2.9) 		88.9
(0.1) 		90.8
(0.2) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21683
Sequence Type Exemplar sequence
Representative Public ID CEK131D6R NCBI
Target Description CEK131D6R_rc /REP_DB=TREMBL Accession /GB=D65119 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk131d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171517 NCBI Caenorhabditis elegans R07B5.9 (R07B5.9) mRNA, complete cds. 11/11 None
R07B5.9 ENSEMBL cdna:known chromosome:CEL140:V:9848733:9851698:-1 gene:R07B5.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9848764-9849090(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B5.9
Entrez Gene 3565873 Entrez gene
SwissProt Q8MPZ9 EMBL-EBI
WormBase CE31575 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44143 Hypothetical protein R07B5.9 [Caenorhabditis elegans] ref|NP_741603.1| R07B5.9 [Caenorhabditis elegans] 0.0
blast CAE72269 Hypothetical protein CBG19389 [Caenorhabditis briggsae] 3.0E-68
Sequence
Target Sequence 
>C. ELEGANS:174973_AT
ctctgattttttaccatttctatttgaaaaaattcactttcaattcgctagatttcccat
gttacggccaactttatgaattgattttctagtgccaatccctcggtcaaattgccttaa
tcgacgtagctttagttgttcatttccttttgtttccaaaaacaactactcaacctcatc
ccgattcctatttcgatttgaacatctcattctccactcaatgactttttttctgttttt
cttgtgaataatttcaattttatttattttatgcattgctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGATTTTTTACCATTTCTATTT 125 233 15 Antisense
AAATTCACTTTCAATTCGCTAGATT 19 117 44 Antisense
GTTACGGCCAACTTTATGAATTGAT 491 445 75 Antisense
AATCCCTCGGTCAAATTGCCTTAAT 149 161 111 Antisense
TCGGTCAAATTGCCTTAATCGACGT 564 603 117 Antisense
CCAAAAACAACTACTCAACCTCATC 216 275 170 Antisense
TCCCGATTCCTATTTCGATTTGAAC 363 597 193 Antisense
GATTTGAACATCTCATTCTCCACTC 624 427 209 Antisense
TCCACTCAATGACTTTTTTTCTGTT 360 589 227 Antisense
TTTCTGTTTTTCTTGTGAATAATTT 406 671 244 Antisense
TTTATTTATTTTATGCATTGCTCTA 271 675 273 Antisense
Sequence Source Affymetrix Proprietary Database