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[174972_s_at]

Description CEK112E3R_rc /REP_DB=TREMBL Accession /GB=D73002 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 29      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1310
1 2 3 4 range
A 916.6
(-1.6)
P 		629.2
(-3)
P 		645.6
(-2.9)
P 		1904.4
(3)
P 		1275
B 891
(-1.5)
P 		713.6
(-2.4)
P 		594.9
(-3)
P 		1790.2
(3)
P 		1195
C 850.9
(-2)
P 		868.7
(-1.8)
P 		777.3
(-3)
P 		1240.7
(3)
P 		463
avr 886.2
(-1.7) 		737.2
(-2.6) 		672.6
(-3) 		1645.1
(3) 		973

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 674
1 2 3 4 5 6 range
A 1010
(3)
P 		774.9
(-0.1)
P 		639.3
(-1.9)
P 		554.4
(-3)
P 		838
(0.7)
P 		867.2
(1.1)
P 		456
B 937
(2.8)
P 		781.3
(0.4)
P 		561.4
(-3)
P 		751.7
(-0.1)
P 		723.5
(-0.5)
P 		950.5
(3)
P 		389
C 1222
(3)
P 		548
(-3)
P 		637.5
(-2.2)
P 		633.8
(-2.2)
P 		976.3
(0.8)
P 		601.7
(-2.5)
P 		674
avr 1056.3
(3) 		701.4
(-1.8) 		612.7
(-3) 		646.6
(-2.5) 		845.9
(0.2) 		806.5
(-0.4) 		444
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 333.7
(3)
P 		136.6
(-3)
P 		168.8
(-2)
P 		278.8
(1.3)
P 		197
B 284.1
(0.6)
P 		176.2
(-2.1)
P 		137.8
(-3)
P 		381.5
(3)
P 		244
C 281.7
(3)
P 		249.8
(0.4)
P 		270.9
(2.1)
P 		209.2
(-3)
P 		73
avr 299.8
(3) 		187.5
(-3) 		192.5
(-2.7) 		289.8
(2.5) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 186.2
(-0.9)
P 		275.6
(3)
P 		139.2
(-3)
P 		140.6
(-2.9)
P 		252.9
(2)
P 		211.1
(0.2)
P 		136
B 326
(2.2)
P 		260
(0.4)
P 		136.3
(-3)
P 		199.1
(-1.3)
P 		293.9
(1.3)
P 		354.4
(3)
P 		218
C 452.9
(3)
P 		167.2
(-2.3)
P 		162.3
(-2.4)
P 		127.5
(-3)
P 		315.9
(0.5)
P 		201.4
(-1.6)
P 		325
avr 321.7
(3) 		234.3
(0) 		145.9
(-3) 		155.7
(-2.7) 		287.6
(1.8) 		255.6
(0.7) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174972_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20311
Sequence Type Exemplar sequence
Representative Public ID CEK112E3R NCBI
Target Description CEK112E3R_rc /REP_DB=TREMBL Accession /GB=D73002 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M01E5.3.2 ENSEMBL cdna:known chromosome:CEL140:I:13289014:13294618:-1 gene:M01E5.3 11/11 None
M01E5.3.1 ENSEMBL cdna:known chromosome:CEL140:I:13289014:13294616:-1 gene:M01E5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13288978-13289301(-) 100.0 100.0
Public Domain and Genome References
Ensembl M01E5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07641 Hypothetical protein M01E5.3 [Caenorhabditis elegans] ref|NP_493335.1| M01E5.3 [Caenorhabditis elegans] 0.0
blast CAE73002 Hypothetical protein CBG20351 [Caenorhabditis briggsae] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:174972_S_AT
tcattttttcccaccaattttcatacaaatttgaaattgtacagaattttcccttttttc
cttttaattcttaatgctaaaatcacttaattttacccaaaaataatttaccatgtcttc
tctaattccctgtctctctctctctctcgcttgattcacagtttgacgtactccgccgaa
caatttcgcttctttttttgttgaaatgtttttttttcacacctacatagcctataagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTTTTCCCACCAATTTTCATA 26 619 17 Antisense
TTTTCCCACCAATTTTCATACAAAT 550 677 22 Antisense
AAAATAATTTACCATGTCTTCTCTA 380 133 116 Antisense
AATTTACCATGTCTTCTCTAATTCC 696 173 121 Antisense
TCTCTCTCGCTTGATTCACAGTTTG 193 613 157 Antisense
GCTTGATTCACAGTTTGACGTACTC 287 307 165 Antisense
GTACTCCGCCGAACAATTTCGCTTC 257 459 184 Antisense
TCCGCCGAACAATTTCGCTTCTTTT 267 597 188 Antisense
TTCGCTTCTTTTTTTGTTGAAATGT 232 697 201 Antisense
TTTTTTTTTCACACCTACATAGCCT 145 673 225 Antisense
TTTCACACCTACATAGCCTATAAGC 675 671 231 Antisense
Sequence Source Affymetrix Proprietary Database