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[174969_s_at]

Description CEK112F1R_rc /REP_DB=TREMBL Accession /GB=D73008 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 65      6grp_total > 93      4grp_total > 57      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1055
1 2 3 4 range
A 931.3
(-1.8)
P 		1353.8
(1.4)
P 		1561.9
(3)
P 		774.1
(-3)
P 		788
B 1112.3
(-1.6)
P 		1392.2
(3)
P 		1288
(1.3)
P 		1029.3
(-3)
P 		363
C 1048.6
(-1.8)
P 		1658.2
(1.9)
P 		1828.9
(3)
P 		857
(-3)
P 		972
avr 1030.7
(-1.7) 		1468.1
(2.2) 		1559.6
(3) 		886.8
(-3) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 827.4
(-1.4)
P 		1223.5
(1.4)
P 		594.4
(-3)
P 		926.1
(-0.7)
P 		1449.7
(3)
P 		993.8
(-0.2)
P 		855
B 885.2
(-3)
P 		1132.4
(-0.3)
P 		909
(-2.7)
P 		1160.1
(0)
P 		1430.4
(3)
P 		887.3
(-3)
P 		545
C 1231.9
(2.1)
P 		964.2
(-1.5)
P 		990.2
(-1.1)
P 		907.2
(-2.2)
P 		1298.8
(3)
P 		850.4
(-3)
P 		448
avr 981.5
(-1.4) 		1106.7
(-0.1) 		831.2
(-3) 		997.8
(-1.2) 		1393
(3) 		910.5
(-2.2) 		562
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 339.1
(1.6)
P 		293.9
(0.7)
P 		408.3
(3)
P 		113.3
(-3)
P 		295
B 354.7
(3)
P 		343.8
(2.5)
P 		298.5
(0.5)
P 		219.3
(-3)
P 		135
C 347.1
(-0.5)
P 		476.7
(1)
P 		637.4
(3)
P 		144.5
(-3)
P 		493
avr 347
(0.9) 		371.5
(1.4) 		448.1
(3) 		159
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 152.5
(-2.6)
P 		435.1
(3)
P 		129.5
(-3)
P 		234.9
(-0.9)
P 		437.5
(3)
P 		242
(-0.8)
P 		308
B 308
(-1.5)
P 		376.9
(-0.4)
P 		220.7
(-3)
P 		307.3
(-1.6)
P 		581.1
(3)
P 		330.9
(-1.2)
P 		360
C 456.6
(3)
P 		294.2
(-0.6)
P 		252
(-1.5)
P 		182.4
(-3)
P 		420.3
(2.2)
P 		284.7
(-0.8)
P 		274
avr 305.7
(-0.7) 		368.7
(0.6) 		200.7
(-3) 		241.5
(-2.1) 		479.6
(3) 		285.9
(-1.2) 		279
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174969_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20845
Sequence Type Exemplar sequence
Representative Public ID CEK112F1R NCBI
Target Description CEK112F1R_rc /REP_DB=TREMBL Accession /GB=D73008 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F07F6.4.2 ENSEMBL cdna:known chromosome:CEL140:II:5425729:5429544:-1 gene:F07F6.4 11/11 None
F07F6.4.1 ENSEMBL cdna:known chromosome:CEL140:II:5425729:5429542:-1 gene:F07F6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5425754-5426079(-) 100.0 100.0
Public Domain and Genome References
Ensembl F07F6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL38955 Hypothetical protein F07F6.4 [Caenorhabditis elegans] ref|NP_495029.2| F07F6.4 [Caenorhabditis elegans] sp|Q09531|YQP4_CAEEL Hypothetical protein F07F6.4 in chromosome III 0.0
blast T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans 0.0
blast CAE59102 Hypothetical protein CBG02397 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 5.5E-62
Sequence
Target Sequence 
>C. ELEGANS:174969_S_AT
gatcatattttctaaaccagtccttgtgactttttgggcagtgtgggaaaatcaggagtt
tttcatcagtcacttgttttcctgttttgatttttgcgtcaaattatttatgtcgcgatc
catatttttccgaatttacatgttagccccagtcttccaacttttgtttccttctatcaa
aatgctcttcccgtcttggaatttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATATTTTCTAAACCAGTCCTT 145 421 69 Antisense
ACCAGTCCTTGTGACTTTTTGGGCA 5 23 84 Antisense
ATCAGGAGTTTTTCATCAGTCACTT 402 29 119 Antisense
TCAGTCACTTGTTTTCCTGTTTTGA 586 621 134 Antisense
TTTTCCTGTTTTGATTTTTGCGTCA 242 675 145 Antisense
GTCAAATTATTTATGTCGCGATCCA 416 463 166 Antisense
GTCGCGATCCATATTTTTCCGAATT 301 475 180 Antisense
GAATTTACATGTTAGCCCCAGTCTT 586 325 200 Antisense
TTCCAACTTTTGTTTCCTTCTATCA 362 699 223 Antisense
TCAAAATGCTCTTCCCGTCTTGGAA 509 629 245 Antisense
GCTCTTCCCGTCTTGGAATTTTTCG 611 297 252 Antisense
Sequence Source Affymetrix Proprietary Database