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[174968_at]

Description CEK070BZR_rc /REP_DB=TREMBL Accession /GB=D65867 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk70b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 506.1
(2.6)
P 		298.9
(-2.4)
P 		272.6
(-3)
P 		524.9
(3)
P 		252
B 490.3
(-0.4)
P 		384.3
(-2.9)
P 		379.6
(-3)
P 		632.2
(3)
P 		253
C 535.5
(1.9)
P 		284.7
(-3)
P 		295.2
(-2.8)
P 		594.2
(3)
P 		310
avr 510.6
(1.4) 		322.6
(-2.8) 		315.8
(-3) 		583.8
(3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 618.8
(3)
P 		417.8
(-0.1)
P 		315.9
(-1.6)
P 		227.4
(-3)
P 		385.6
(-0.6)
P 		333.1
(-1.4)
P 		391
B 548.7
(3)
P 		451.6
(1)
P 		285.8
(-2.5)
P 		372.5
(-0.7)
P 		262
(-3)
P 		340.6
(-1.4)
P 		287
C 428.8
(0.7)
P 		562.9
(3)
P 		299.5
(-1.6)
P 		271.7
(-2)
P 		215.9
(-3)
P 		252.4
(-2.4)
P 		347
avr 532.1
(3) 		477.4
(1.7) 		300.4
(-2.7) 		290.5
(-2.9) 		287.8
(-3) 		308.7
(-2.5) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 184.3
(3)
P 		64.9
(-3)
P 		71.3
(-2.7)
P 		76.8
(-2.4)
P 		119
B 156.3
(3)
P 		94.9
(-2.4)
P 		88
(-3)
P 		134.7
(1.1)
P 		68
C 177.3
(3)
P 		81.9
(-3)
P 		102.9
(-1.7)
P 		100.2
(-1.8)
P 		95
avr 172.6
(3) 		80.6
(-3) 		87.4
(-2.6) 		103.9
(-1.5) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 114.1
(0.7)
P 		148.6
(3)
P 		68.8
(-2.3)
P 		57.7
(-3)
P 		116.4
(0.9)
P 		81.1
(-1.5)
P 		91
B 190.9
(3)
P 		150.3
(1)
P 		69.4
(-3)
P 		98.7
(-1.6)
P 		106.5
(-1.2)
P 		127
(-0.2)
P 		122
C 158.9
(2.3)
P 		171.8
(3)
P 		76.2
(-1.9)
P 		54.6
(-3)
P 		69.9
(-2.2)
P 		84.5
(-1.5)
P 		117
avr 154.6
(2.8) 		156.9
(3) 		71.5
(-2.9) 		70.3
(-3) 		97.6
(-1.1) 		97.5
(-1.1) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22461
Sequence Type Exemplar sequence
Representative Public ID CEK070BZR NCBI
Target Description CEK070BZR_rc /REP_DB=TREMBL Accession /GB=D65867 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk70b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W05H7.4a ENSEMBL cdna:known chromosome:CEL140:X:1440368:1443390:-1 gene:W05H7.4 11/11 None
W05H7.4b ENSEMBL cdna:known chromosome:CEL140:X:1440368:1446638:-1 gene:W05H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1440377-1440594(-) 100.0 100.0
Public Domain and Genome References
Ensembl W05H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741720 W05H7.4a [Caenorhabditis elegans] gb|AAQ01520.1| Hypothetical protein W05H7.4a [Caenorhabditis elegans] 0.0
blast NP_741719 W05H7.4b [Caenorhabditis elegans] gb|AAQ01521.1| Hypothetical protein W05H7.4b [Caenorhabditis elegans] 0.0
blast NP_001024942 W05H7.4e [Caenorhabditis elegans] gb|AAX55684.1| Hypothetical protein W05H7.4e [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:174968_AT
attttccacatttctagtcacatttctgacccccccccccattagttctttttccaaccc
gtaatatattgtttttttttgggtatttttctctttccgctctcattagttatcatgtat
caagccttatcttgcagctgtgatttttggaatccttctttctgtttctttgtaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCCACATTTCTAGTCACATTT 279 15 14 Antisense
ATTTCTAGTCACATTTCTGACCCCC 514 15 23 Antisense
TCTTTTTCCAACCCGTAATATATTG 511 615 60 Antisense
TCTTTCCGCTCTCATTAGTTATCAT 607 615 105 Antisense
TTCCGCTCTCATTAGTTATCATGTA 452 699 108 Antisense
GTTATCATGTATCAAGCCTTATCTT 70 447 122 Antisense
GTATCAAGCCTTATCTTGCAGCTGT 585 453 130 Antisense
GCCTTATCTTGCAGCTGTGATTTTT 597 281 137 Antisense
GTGATTTTTGGAATCCTTCTTTCTG 366 485 153 Antisense
TTTTGGAATCCTTCTTTCTGTTTCT 284 679 158 Antisense
ATCCTTCTTTCTGTTTCTTTGTAGA 294 39 165 Antisense
Sequence Source Affymetrix Proprietary Database