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[174967_at]

Description CEK134C6R_rc /REP_DB=TREMBL Accession /GB=D65296 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 97      6grp_total > 69      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2022
1 2 3 4 range
A 1685.3
(-0.9)
P 		1014.2
(-3)
P 		1052.9
(-2.9)
P 		2888.7
(3)
P 		1875
B 1542.9
(-0.6)
P 		1324.4
(-1.4)
P 		867
(-3)
P 		2591
(3)
P 		1724
C 1410.5
(-1.5)
P 		1032.5
(-3)
P 		1024.4
(-3)
P 		2541.1
(3)
P 		1517
avr 1546.2
(-1) 		1123.7
(-2.5) 		981.4
(-3) 		2673.6
(3) 		1692

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1288
1 2 3 4 5 6 range
A 1229.6
(0.3)
P 		916
(-1.4)
P 		603
(-3)
P 		835.5
(-1.8)
P 		1224.5
(0.3)
P 		1746.1
(3)
P 		1143
B 944.5
(-0.6)
P 		790.1
(-1.4)
P 		458.4
(-3)
P 		1071.5
(0)
P 		943.9
(-0.6)
P 		1669
(3)
P 		1211
C 860
(-2.4)
P 		769.7
(-3)
P 		911.8
(-2)
P 		846.7
(-2.5)
P 		1046.3
(-1)
P 		1612.1
(3)
P 		842
avr 1011.4
(-0.9) 		825.3
(-2) 		657.7
(-3) 		917.9
(-1.5) 		1071.6
(-0.6) 		1675.7
(3) 		1018
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 613.6
(3)
P 		220.1
(-3)
P 		275.3
(-2.2)
P 		422.8
(0.1)
P 		394
B 492
(2)
P 		327.1
(-0.8)
P 		200.9
(-3)
P 		552.1
(3)
P 		351
C 466.9
(3)
P 		296.9
(-3)
P 		357
(-0.9)
P 		428.5
(1.6)
P 		170
avr 524.2
(3) 		281.4
(-2.9) 		277.7
(-3) 		467.8
(1.6) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 226.7
(-1.1)
P 		325.8
(1)
P 		131.3
(-3)
P 		211.9
(-1.4)
P 		369.5
(1.9)
P 		425.1
(3)
P 		294
B 328.6
(-0.4)
P 		263
(-1.2)
P 		111.3
(-3)
P 		283.8
(-1)
P 		383.5
(0.2)
P 		622.4
(3)
P 		511
C 318.8
(-0.6)
P 		234.9
(-2)
P 		232.1
(-2)
P 		170.3
(-3)
P 		338.6
(-0.3)
P 		539.7
(3)
P 		369
avr 291.4
(-0.8) 		274.6
(-1.1) 		158.2
(-3) 		222
(-2) 		363.9
(0.3) 		529.1
(3) 		371
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20242
Sequence Type Exemplar sequence
Representative Public ID CEK134C6R NCBI
Target Description CEK134C6R_rc /REP_DB=TREMBL Accession /GB=D65296 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058920 NCBI Caenorhabditis elegans R12E2.2 (R12E2.2) mRNA, complete cds. 11/11 None
R12E2.2.2 ENSEMBL cdna:known chromosome:CEL140:I:4178811:4182114:1 gene:R12E2.2 11/11 None
R12E2.2.1 ENSEMBL cdna:known chromosome:CEL140:I:4178813:4182159:1 gene:R12E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4181767-4182093(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R12E2.2
Entrez Gene 172011 Entrez gene
SwissProt O61794 EMBL-EBI
WormBase CE28764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491321 R12E2.2 [Caenorhabditis elegans] gb|AAC17023.2| Hypothetical protein R12E2.2 [Caenorhabditis elegans] 0.0
blast CAE66742 Hypothetical protein CBG12092 [Caenorhabditis briggsae] 0.0
blast XP_514000 PREDICTED: similar to membrane protein CH1 [Pan troglodytes] 1.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491321.1 1 646-668
R12E2.2.2 1 646-668
R12E2.2.1 1 646-668
Sequence
Target Sequence 
>C. ELEGANS:174967_AT
ggtgactagcattccatacgagttcaattctttctttctctttccttccttttccatcac
tctcgcccatttacaatcaaattgccctcttcccccataccgattgaattgatttcgttt
gtacaggttttcgacattcaatgtcgcttattattctccatcctgaaccatttttcagct
tgctgtgcatgcttttctcccccaattttactgtgaacagggtctcctcgccgtccggtg
tgatatatttgccacaccgaattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGACTAGCATTCCATACGAGTTC 260 499 43 Antisense
TCCATACGAGTTCAATTCTTTCTTT 81 587 55 Antisense
CACTCTCGCCCATTTACAATCAAAT 2 199 100 Antisense
TTTACAATCAAATTGCCCTCTTCCC 507 673 112 Antisense
TCTTCCCCCATACCGATTGAATTGA 193 615 130 Antisense
CAATGTCGCTTATTATTCTCCATCC 454 183 181 Antisense
TATTCTCCATCCTGAACCATTTTTC 548 663 194 Antisense
TTCAGCTTGCTGTGCATGCTTTTCT 489 687 216 Antisense
TCTCCCCCAATTTTACTGTGAACAG 162 611 238 Antisense
TCCTCGCCGTCCGGTGTGATATATT 537 593 267 Antisense
GATATATTTGCCACACCGAATTGAT 597 425 284 Antisense
Sequence Source Affymetrix Proprietary Database