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[174965_s_at] isocitrate lyase like

Description CEK028DYR_rc /REP_DB=TREMBL Accession /GB=D33259 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28d11 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 13.1
(-3)
A 		14.8
(-2.8)
A 		17.5
(-2.6)
A 		78.3
(3)
A 		65
B 26.8
(-1.4)
A 		61.5
(2.1)
A 		10.6
(-3)
A 		70.1
(3)
A 		60
C 8.1
(-3)
A 		14.1
(-2.6)
A 		42.1
(-0.5)
A 		89.7
(3)
A 		82
avr 16
(-3) 		30.1
(-1.7) 		23.4
(-2.3) 		79.4
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 62.7
(-2.5)
A 		15.4
(-3)
A 		82.7
(-2.3)
A 		20.7
(-2.9)
A 		268.3
(-0.5)
P 		615.6
(3)
P 		600
B 35
(-2.8)
A 		12.5
(-3)
A 		74
(-2.5)
A 		48.2
(-2.7)
A 		186
(-1.6)
P 		745.2
(3)
P 		733
C 16.5
(-3)
A 		101
(-2.3)
A 		29.9
(-2.9)
A 		60.2
(-2.6)
A 		181.6
(-1.6)
P 		703.2
(3)
P 		687
avr 38.1
(-3) 		43
(-3) 		62.2
(-2.8) 		43
(-3) 		212
(-1.4) 		688
(3) 		650
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.8
(-1.8)
A 		3.2
(-3)
A 		4.6
(-2)
A 		11.5
(3)
A 		8
B 8.5
(-0.2)
A 		15.2
(3)
A 		2.5
(-3)
A 		14.9
(2.9)
A 		13
C 2.7
(-3)
A 		4.1
(-2.3)
A 		14.7
(2.8)
A 		15.1
(3)
A 		12
avr 5.3
(-3) 		7.5
(-1.4) 		7.3
(-1.6) 		13.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 11.6
(-2.7)
A 		5.5
(-3)
A 		18
(-2.5)
A 		5.2
(-3)
A 		81
(0.1)
P 		149.9
(3)
P 		145
B 12.2
(-2.8)
A 		4.2
(-3)
A 		18
(-2.7)
A 		12.8
(-2.8)
A 		75.6
(-1.4)
P 		277.9
(3)
P 		274
C 6.1
(-3)
A 		30.8
(-2.4)
A 		7.6
(-3)
A 		12.1
(-2.8)
A 		58.8
(-1.6)
P 		235.4
(3)
P 		229
avr 10
(-3) 		13.5
(-2.9) 		14.5
(-2.9) 		10
(-3) 		71.8
(-1.2) 		221.1
(3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174965_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22284
Sequence Type Exemplar sequence
Representative Public ID CEK028DYR NCBI
Target Description CEK028DYR_rc /REP_DB=TREMBL Accession /GB=D33259 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077918 NCBI Caenorhabditis elegans K02B9.1 (K02B9.1) mRNA, complete cds. 11/11 None
K02B9.1 ENSEMBL cdna:known chromosome:CEL140:X:13926968:13929552:-1 gene:K02B9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13926977-13927355(-) 100.0 100.0
Public Domain and Genome References
Gene Title isocitrate lyase like
Ensembl K02B9.1
Entrez Gene 181502 Entrez gene
SwissProt Q21126 EMBL-EBI
WormBase CE16206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93511 Hypothetical protein K02B9.1 [Caenorhabditis elegans] ref|NP_510319.1| K02B9.1 [Caenorhabditis elegans] 0.0
blast CAA93509 Hypothetical protein K02B9.2 [Caenorhabditis elegans] ref|NP_510318.2| K02B9.2 [Caenorhabditis elegans] 9.0E-61
Sequence
Target Sequence 
>C. ELEGANS:174965_S_AT
gattttcatcaaccatcaacccatcttgtgctgtatttgtatctcatagtagaaacctcc
cagcaactaattttgacttttggctcgcctgccaacatcaatcttattacccaattttgt
accataacactctctatttctaccacactaaccaatttcacgattagaaattctttttcc
tgtgatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCATCAACCATCAACCCATC 371 429 97 Antisense
CATCAACCCATCTTGTGCTGTATTT 409 213 110 Antisense
TGTGCTGTATTTGTATCTCATAGTA 320 557 123 Antisense
TCTCATAGTAGAAACCTCCCAGCAA 250 611 138 Antisense
AGAAACCTCCCAGCAACTAATTTTG 562 69 147 Antisense
ACTAATTTTGACTTTTGGCTCGCCT 292 101 162 Antisense
TCGCCTGCCAACATCAATCTTATTA 599 599 181 Antisense
CATCAATCTTATTACCCAATTTTGT 479 213 192 Antisense
GTACCATAACACTCTCTATTTCTAC 671 457 215 Antisense
TTCTACCACACTAACCAATTTCACG 101 691 234 Antisense
TAGAAATTCTTTTTCCTGTGATTTT 253 651 261 Antisense
Sequence Source Affymetrix Proprietary Database