[Home] | [Total List]

[174964_at] isocitrate lyase like

Description CEK028DYR_rc /REP_DB=TREMBL Accession /GB=D33259 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28d11 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 31.8
(-1.5)
A 		18.9
(-3)
A 		24.2
(-2.4)
A 		69.6
(3)
M 		51
B 48.5
(-0.9)
A 		30.9
(-2.3)
A 		21.5
(-3)
A 		99.1
(3)
P 		78
C 17.8
(-1.4)
A 		12.3
(-2)
A 		2.7
(-3)
A 		60.2
(3)
A 		58
avr 32.7
(-1.3) 		20.7
(-2.5) 		16.1
(-3) 		76.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 817
1 2 3 4 5 6 range
A 40.1
(-2.6)
A 		3.6
(-3)
A 		53.9
(-2.5)
P 		0.9
(-3)
A 		314.8
(-0.1)
P 		641.1
(3)
P 		640
B 41.2
(-2.8)
P 		40.5
(-2.8)
P 		16.7
(-3)
A 		10.8
(-3)
A 		273.5
(-1)
P 		788.8
(3)
P 		778
C 28.3
(-2.9)
M 		60.5
(-2.6)
P 		10.5
(-3)
A 		24.3
(-2.9)
A 		235.1
(-1.3)
P 		817.7
(3)
P 		807
avr 36.5
(-2.8) 		34.9
(-2.8) 		27
(-2.9) 		12
(-3) 		274.5
(-0.9) 		749.2
(3) 		737
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.6
(3)
A 		4.1
(-3)
A 		6.3
(-1.2)
A 		10.2
(1.9)
M 		8
B 15.5
(0.9)
A 		7.6
(-2)
A 		5
(-3)
A 		21.1
(3)
P 		16
C 5.9
(0.3)
A 		3.5
(-1.3)
A 		0.9
(-3)
A 		10.1
(3)
A 		9
avr 11
(1.3) 		5.1
(-2.4) 		4.1
(-3) 		13.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 7.4
(-2.7)
A 		1.3
(-3)
A 		11.7
(-2.6)
P 		0.2
(-3)
A 		95
(0.6)
P 		156.1
(3)
P 		156
B 14.3
(-2.8)
P 		13.5
(-2.8)
P 		4.1
(-3)
A 		2.9
(-3)
A 		111.1
(-0.8)
P 		294.1
(3)
P 		291
C 10.5
(-2.8)
M 		18.5
(-2.7)
P 		2.7
(-3)
A 		4.9
(-3)
A 		76.1
(-1.4)
P 		273.7
(3)
P 		271
avr 10.7
(-2.8) 		11.1
(-2.8) 		6.2
(-2.9) 		2.7
(-3) 		94.1
(-0.7) 		241.3
(3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22284
Sequence Type Exemplar sequence
Representative Public ID CEK028DYR NCBI
Target Description CEK028DYR_rc /REP_DB=TREMBL Accession /GB=D33259 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077918 NCBI Caenorhabditis elegans K02B9.1 (K02B9.1) mRNA, complete cds. 11/11 None
K02B9.1 ENSEMBL cdna:known chromosome:CEL140:X:13926968:13929552:-1 gene:K02B9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032412 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13926977-13927355(-) 100.0 100.0
Public Domain and Genome References
Gene Title isocitrate lyase like
Ensembl K02B9.1
Entrez Gene 181502 Entrez gene
SwissProt Q21126 EMBL-EBI
WormBase CE16206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93511 Hypothetical protein K02B9.1 [Caenorhabditis elegans] ref|NP_510319.1| K02B9.1 [Caenorhabditis elegans] 0.0
blast CAA93509 Hypothetical protein K02B9.2 [Caenorhabditis elegans] ref|NP_510318.2| K02B9.2 [Caenorhabditis elegans] 9.0E-61
Sequence
Target Sequence 
>C. ELEGANS:174964_AT
cttactgtgctgccattttgtaccataacaattctatttttaccatactaaccaatttca
caattacaaattatattttcctgtgattttcatcaaccatcaacccatcttgtgctgtat
ttgtatctcatagtagaaacctcccagcaactaattttgacttttggctcgcctgccaac
atcaatcttattacccaattttgtaccataacactctctatttctaccacactaaccaat
ttcacgattagaaattctttttcctgtgattttcttcaaccatcttgtattgtacttgta
tctcatagtgctcagtttcagtcttacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTACTGTGCTGCCATTTTGTACCA 80 221 13 Antisense
CTGTGCTGCCATTTTGTACCATAAC 21 241 17 Antisense
TGTACCATAACAATTCTATTTTTAC 98 561 31 Antisense
TAACAATTCTATTTTTACCATACTA 596 639 38 Antisense
TTACCATACTAACCAATTTCACAAT 325 679 52 Antisense
CTGTGATTTTCTTCAACCATCTTGT 96 241 276 Antisense
GATTTTCTTCAACCATCTTGTATTG 419 429 280 Antisense
TCAACCATCTTGTATTGTACTTGTA 544 631 288 Antisense
TGTACTTGTATCTCATAGTGCTCAG 633 559 303 Antisense
GTATCTCATAGTGCTCAGTTTCAGT 139 455 310 Antisense
CATAGTGCTCAGTTTCAGTCTTACC 91 215 316 Antisense
Sequence Source Affymetrix Proprietary Database