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[174963_at]

Description CEK117C8R_rc /REP_DB=TREMBL Accession /GB=D73322 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk117c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 86      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1101
1 2 3 4 range
A 1360.9
(3)
P 		994.5
(-1.9)
P 		915.3
(-3)
P 		1187.2
(0.7)
P 		446
B 1282.9
(-0.3)
P 		976.9
(-2)
P 		789.5
(-3)
P 		1890
(3)
P 		1101
C 1254
(-0.6)
P 		988.6
(-2.5)
P 		915.2
(-3)
P 		1753.9
(3)
P 		839
avr 1299.3
(0.5) 		986.7
(-2.1) 		873.3
(-3) 		1610.4
(3) 		737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 1113.1
(3)
P 		928
(-0.2)
P 		873.2
(-1.1)
P 		764
(-3)
P 		1043.7
(1.8)
P 		1060.2
(2.1)
P 		349
B 1119.4
(3)
P 		1077.9
(2.1)
P 		839.2
(-3)
P 		1027.3
(1)
P 		891.4
(-1.9)
P 		1032.6
(1.1)
P 		280
C 1027.4
(1.2)
P 		1052.4
(2.1)
P 		915.3
(-3)
P 		1036.1
(1.5)
P 		972.2
(-0.9)
P 		1075.4
(3)
P 		160
avr 1086.6
(3) 		1019.4
(1.1) 		875.9
(-3) 		942.5
(-1.1) 		969.1
(-0.3) 		1056.1
(2.1) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 495.5
(3)
P 		215.9
(-2.2)
P 		239.3
(-1.8)
P 		173.8
(-3)
P 		322
B 409.1
(3)
P 		241.3
(-1.5)
P 		183
(-3)
P 		402.8
(2.8)
P 		226
C 415.1
(3)
P 		284.2
(-3)
P 		319
(-1.4)
P 		295.7
(-2.5)
P 		131
avr 439.9
(3) 		247.1
(-3) 		247.1
(-3) 		290.8
(-1.6) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 205.2
(-2.4)
P 		330
(3)
P 		190.2
(-3)
P 		193.8
(-2.8)
P 		314.9
(2.4)
P 		258.1
(-0.1)
P 		140
B 389.5
(3)
P 		358.8
(2)
P 		203.8
(-3)
P 		272.1
(-0.8)
P 		362.2
(2.1)
P 		385.1
(2.9)
P 		186
C 380.8
(3)
P 		321.1
(0.9)
P 		233
(-2.1)
P 		208.4
(-3)
P 		314.6
(0.7)
P 		360
(2.3)
P 		172
avr 325.2
(2.5) 		336.6
(3) 		209
(-3) 		224.8
(-2.3) 		330.6
(2.7) 		334.4
(2.9) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20787
Sequence Type Exemplar sequence
Representative Public ID CEK117C8R NCBI
Target Description CEK117C8R_rc /REP_DB=TREMBL Accession /GB=D73322 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk117c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170989 NCBI Caenorhabditis elegans C27D6.4c (C27D6.4) mRNA, complete cds. 11/11 None
C27D6.4c ENSEMBL cdna:known chromosome:CEL140:II:5179022:5186255:-1 gene:C27D6.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
259434 3 1 NM_170989 174963_at (11), 176715_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5179033-5179370(-) 100.0 100.0
Public Domain and Genome References
Ensembl C27D6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740987 C27D6.4c [Caenorhabditis elegans] gb|AAN63447.1| Hypothetical protein C27D6.4c [Caenorhabditis elegans] 1.0E-107
blast NP_740986 C27D6.4b [Caenorhabditis elegans] gb|AAN63446.1| Hypothetical protein C27D6.4b [Caenorhabditis elegans] 1.0E-94
blast NP_740985 C27D6.4a [Caenorhabditis elegans] gb|AAN63445.1| Hypothetical protein C27D6.4a [Caenorhabditis elegans] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 8.1E-15
Sequence
Target Sequence 
>C. ELEGANS:174963_AT
aggccttcagttttgaattgttccagttttaaccgcttttcatcactcatgttacattga
atgattcttgtaacatctcctttttctgtaaatcatagcctgggtattaattataagagt
agaacatgatttcttcaaaagaaaacattttcactcaattttccaactgatcggtttcta
ttaatttcttcttgttgattttactctttcttgggacactgattctacctccttgcataa
ttacccatctatatgcttcctttttatgtaattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCCTTCAGTTTTGAATTGTTCCA 603 53 25 Antisense
TGTTCCAGTTTTAACCGCTTTTCAT 643 559 43 Antisense
CCGCTTTTCATCACTCATGTTACAT 520 263 57 Antisense
ATTCTTGTAACATCTCCTTTTTCTG 523 7 88 Antisense
CTCCTTTTTCTGTAAATCATAGCCT 105 235 101 Antisense
ATCGGTTTCTATTAATTTCTTCTTG 508 35 194 Antisense
GTTGATTTTACTCTTTCTTGGGACA 329 435 218 Antisense
TTCTTGGGACACTGATTCTACCTCC 405 689 232 Antisense
TGATTCTACCTCCTTGCATAATTAC 133 565 244 Antisense
AATTACCCATCTATATGCTTCCTTT 697 175 263 Antisense
ATGCTTCCTTTTTATGTAATTTTCA 431 43 277 Antisense
Sequence Source Affymetrix Proprietary Database