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[174962_at]

Description CEK089FYR_rc /REP_DB=TREMBL Accession /GB=D72087 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk89f11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 80      4grp_high_8_8 > 09      6grp_total > 82      4grp_total > 23      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 66
(3)
P 		43.4
(-3)
A 		54.1
(-0.2)
P 		58.9
(1.1)
P 		23
B 129.3
(3)
P 		83.6
(-0.4)
P 		47.7
(-3)
A 		80.3
(-0.6)
P 		82
C 92.4
(1)
P 		46.7
(-3)
P 		64.4
(-1.5)
P 		115.3
(3)
P 		69
avr 95.9
(3) 		57.9
(-2.6) 		55.4
(-3) 		84.8
(1.4) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 116.3
(1.3)
P 		128.2
(2.1)
P 		115
(1.2)
P 		100.1
(0.1)
P 		141.4
(3)
P 		55.2
(-3)
A 		86
B 87
(-3)
P 		136.9
(2.7)
P 		109.5
(-0.4)
P 		98.6
(-1.7)
P 		139.7
(3)
P 		112.1
(-0.1)
P 		53
C 101.2
(-0.4)
P 		83.7
(-1.8)
P 		129.9
(1.8)
P 		146.3
(3)
P 		99.5
(-0.6)
P 		67.4
(-3)
P 		79
avr 101.5
(-0.1) 		116.3
(1.7) 		118.1
(1.9) 		115
(1.5) 		126.9
(3) 		78.2
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 24
(3)
P 		9.4
(-2.7)
A 		14.2
(-0.8)
P 		8.6
(-3)
P 		15
B 41.2
(3)
P 		20.6
(-1.1)
P 		11.1
(-3)
A 		17.1
(-1.8)
P 		30
C 30.6
(3)
P 		13.4
(-3)
P 		22.4
(0.1)
P 		19.4
(-0.9)
P 		17
avr 31.9
(3) 		14.5
(-3) 		15.9
(-2.5) 		15
(-2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 21.4
(-1.5)
P 		45.6
(3)
P 		25
(-0.8)
P 		25.4
(-0.8)
P 		42.7
(2.5)
P 		13.4
(-3)
A 		32
B 30.3
(-2.2)
P 		45.6
(0.8)
P 		26.6
(-2.9)
P 		26.1
(-3)
P 		56.8
(3)
P 		41.8
(0.1)
P 		31
C 37.5
(3)
P 		25.5
(-1.8)
P 		33.1
(1.2)
P 		29.4
(-0.3)
P 		32.2
(0.9)
P 		22.6
(-3)
P 		15
avr 29.7
(-1.7) 		38.9
(1.3) 		28.2
(-2.2) 		27
(-2.6) 		43.9
(3) 		25.9
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20529
Sequence Type Exemplar sequence
Representative Public ID CEK089FYR NCBI
Target Description CEK089FYR_rc /REP_DB=TREMBL Accession /GB=D72087 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk89f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK089FYR
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK089FYR CEK089FYR_rc /REP_DB=TREMBL Accession /GB=D72087 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk89f11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12782664-12783147(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174962_AT
cttcatggctcctaatcttctttttggttttattatattcttgttttgtaaaaatgcatt
ttccctcctttttctcaatttaccaccatgaccaaaaatcccattgaaaatcccatttca
ttaatcagtattcactttttttccccacacttctctcattctattcaagtaagtattttc
tcacatgcaaatttcaatgtctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCATGGCTCCTAATCTTCTTTTT 617 221 93 Antisense
TGGCTCCTAATCTTCTTTTTGGTTT 144 543 98 Antisense
TGTAAAAATGCATTTTCCCTCCTTT 502 559 139 Antisense
TTTTCTCAATTTACCACCATGACCA 400 677 162 Antisense
TTTACCACCATGACCAAAAATCCCA 480 671 171 Antisense
ATCCCATTGAAAATCCCATTTCATT 193 39 190 Antisense
AATCCCATTTCATTAATCAGTATTC 46 169 201 Antisense
CATTAATCAGTATTCACTTTTTTTC 526 215 211 Antisense
TCTCTCATTCTATTCAAGTAAGTAT 169 613 244 Antisense
CAAGTAAGTATTTTCTCACATGCAA 314 183 258 Antisense
CTCACATGCAAATTTCAATGTCTGA 452 227 272 Antisense
Sequence Source Affymetrix Proprietary Database