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[174961_s_at]

Description CEK017AZR_rc /REP_DB=TREMBL Accession /GB=D32450 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 83      6grp_total > 66      4grp_total > 31      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 562.2
(3)
P 		197.1
(-3)
P 		194.1
(-3)
P 		415.3
(0.6)
P 		368
B 602.6
(3)
P 		236.3
(-2.4)
P 		199.2
(-3)
P 		404
(0)
P 		403
C 607.4
(3)
P 		242.1
(-3)
P 		259.5
(-2.7)
P 		443.2
(0.3)
P 		365
avr 590.7
(3) 		225.2
(-2.9) 		217.6
(-3) 		420.8
(0.3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 292.7
(-3)
P 		514.1
(1)
P 		474.9
(0.3)
P 		378.4
(-1.5)
P 		344.3
(-2.1)
P 		625.2
(3)
P 		333
B 329.9
(-3)
P 		523.6
(-0.5)
P 		593.8
(0.4)
P 		383.7
(-2.3)
P 		329.6
(-3)
P 		796.4
(3)
P 		467
C 318.5
(-3)
P 		504.1
(-0.7)
P 		408.6
(-1.9)
P 		464.7
(-1.2)
P 		331.3
(-2.8)
P 		811.6
(3)
P 		493
avr 313.7
(-3) 		513.9
(-0.2) 		492.4
(-0.5) 		408.9
(-1.7) 		335.1
(-2.7) 		744.4
(3) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 204.7
(3)
P 		42.8
(-3)
P 		50.7
(-2.7)
P 		60.8
(-2.3)
P 		162
B 192.2
(3)
P 		58.4
(-2.5)
P 		46.2
(-3)
P 		86.1
(-1.4)
P 		146
C 201.1
(3)
P 		69.6
(-3)
P 		90.4
(-2.1)
P 		74.7
(-2.8)
P 		132
avr 199.3
(3) 		56.9
(-3) 		62.4
(-2.8) 		73.9
(-2.3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 53.9
(-3)
P 		182.8
(3)
P 		103.4
(-0.7)
P 		96
(-1)
P 		103.9
(-0.7)
P 		152.2
(1.6)
P 		129
B 114.8
(-2.6)
P 		174.3
(-0.8)
P 		144.2
(-1.7)
P 		101.6
(-3)
P 		133.9
(-2)
P 		297
(3)
P 		195
C 118.1
(-2.2)
P 		153.8
(-1)
P 		104
(-2.6)
P 		93.5
(-3)
P 		107.2
(-2.5)
P 		271.7
(3)
P 		178
avr 95.6
(-3) 		170.3
(0.1) 		117.2
(-2.1) 		97
(-2.9) 		115
(-2.2) 		240.3
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174961_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20508
Sequence Type Exemplar sequence
Representative Public ID CEK017AZR NCBI
Target Description CEK017AZR_rc /REP_DB=TREMBL Accession /GB=D32450 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026880(11), NM_001026881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026880 NCBI Caenorhabditis elegans SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) (scp-1) mRNA, complete cds. 11/11 None
NM_001026881 NCBI Caenorhabditis elegans SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) (scp-1) mRNA, complete cds. 11/11 None
SNAP00000019829 ENSEMBL cdna:SNAP chromosome:CEL140:II:9333965:9338649:1 11/11 None
D2013.8a.2 ENSEMBL cdna:known chromosome:CEL140:II:9333924:9338799:1 gene:D2013.8 11/11 None
D2013.8a.1 ENSEMBL cdna:known chromosome:CEL140:II:9333926:9338799:1 gene:D2013.8 11/11 None
D2013.8b ENSEMBL cdna:known chromosome:CEL140:II:9336795:9338649:1 gene:D2013.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9338229-9338780(+) 100.0 100.0
Public Domain and Genome References
Ensembl D2013.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87777 Hypothetical protein D2013.8a [Caenorhabditis elegans] ref|NP_001022051.1| SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) [Caenorhabditis elegans] 0.0
blast CAE72907 Hypothetical protein CBG20225 [Caenorhabditis briggsae] 0.0
blast CAI46561 Hypothetical protein D2013.8b [Caenorhabditis elegans] ref|NP_001022052.1| SREBP Cleavage activating Protein (SCAP) homolog family member (scp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022051.1 5 272-289,301-320,335-357,535-557,668-690
NP_001022052.1 1 7-29
D2013.8a.2 5 272-289,301-320,335-357,535-557,668-690
D2013.8a.1 5 272-289,301-320,335-357,535-557,668-690
D2013.8b 1 7-29
SNAP00000019829 5 272-289,301-320,335-357,535-557,668-690
Sequence
Target Sequence 
>C. ELEGANS:174961_S_AT
agtttcagatgctttgggcgatggaacgagcgaagacactttatatactgtcggaagcag
tggagtagtgtcatttgatgatcaagtcgctgcgacaacttcatcagattctgtaacatt
ttgggatttgaagcatcgagcgattattggaaaagtcaagctgaacggaaagatcagttc
tatgcgaaaaaacacgagtcacagcgttttgtgtggagttgacaattcaatgtattcagt
taccgtaccacttgttcgattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTCAGATGCTTTGGGCGATGGA 467 63 13 Antisense
GGGCGATGGAACGAGCGAAGACACT 172 491 28 Antisense
GCGAAGACACTTTATATACTGTCGG 86 289 42 Antisense
GAAGCAGTGGAGTAGTGTCATTTGA 236 341 66 Antisense
ATTTGATGATCAAGTCGCTGCGACA 511 17 85 Antisense
GTCGCTGCGACAACTTCATCAGATT 220 475 98 Antisense
GGGATTTGAAGCATCGAGCGATTAT 531 495 135 Antisense
AACGGAAAGATCAGTTCTATGCGAA 11 143 176 Antisense
AACACGAGTCACAGCGTTTTGTGTG 576 135 203 Antisense
AATGTATTCAGTTACCGTACCACTT 433 159 241 Antisense
TTACCGTACCACTTGTTCGATTCAA 228 683 252 Antisense
Sequence Source Affymetrix Proprietary Database