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[174959_at]

Description CEK098DXR_rc /REP_DB=TREMBL Accession /GB=D72390 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 0      6grp_total > 26      4grp_total > 12      6grp_highest_sub > 01_02      6grp_cgc > 04      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1545
1 2 3 4 range
A 1684.3
(-0.5)
P 		1645.9
(-0.9)
P 		1409.8
(-3)
P 		2077.7
(3)
P 		668
B 1762.8
(-1.4)
P 		1519
(-2.4)
P 		1381.1
(-3)
P 		2787.9
(3)
P 		1407
C 1671
(1.2)
P 		1242.8
(-3)
P 		1356.6
(-1.9)
P 		1860.3
(3)
P 		618
avr 1706
(-0.7) 		1469.2
(-2.4) 		1382.5
(-3) 		2242
(3) 		860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1305
1 2 3 4 5 6 range
A 2060.1
(3)
P 		2023.6
(2.7)
P 		1249.8
(-3)
P 		1354.1
(-2.2)
P 		1811.7
(1.2)
P 		1816.7
(1.2)
P 		810
B 1894.8
(0.7)
P 		2262.6
(3)
P 		1300.4
(-3)
P 		1607
(-1.1)
P 		1378.7
(-2.5)
P 		1786.2
(0)
P 		962
C 1918.8
(2.6)
P 		1996.3
(3)
P 		1517.1
(0.2)
P 		957.3
(-3)
P 		1511.7
(0.2)
P 		1188.7
(-1.7)
P 		1039
avr 1957.9
(2) 		2094.2
(3) 		1355.8
(-2.6) 		1306.1
(-3) 		1567.4
(-1) 		1597.2
(-0.8) 		788
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 613.2
(3)
P 		357.3
(-2)
P 		368.5
(-1.7)
P 		304.1
(-3)
P 		309
B 562.2
(2.3)
P 		375.2
(-1.8)
P 		320
(-3)
P 		594.1
(3)
P 		274
C 553.1
(3)
P 		357.3
(-1.9)
P 		472.8
(1)
P 		313.7
(-3)
P 		239
avr 576.2
(3) 		363.3
(-3) 		387.1
(-2.3) 		404
(-1.9) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 379.8
(-1.6)
P 		719.7
(3)
P 		272.2
(-3)
P 		343.4
(-2)
P 		546.7
(0.7)
P 		442.3
(-0.7)
P 		448
B 659.3
(1.7)
P 		753.1
(3)
P 		315.8
(-3)
P 		425.6
(-1.5)
P 		560.2
(0.4)
P 		666.1
(1.8)
P 		437
C 711.2
(3)
P 		609.1
(1.8)
P 		386.1
(-0.8)
P 		192.5
(-3)
P 		489.2
(0.4)
P 		397.9
(-0.6)
P 		519
avr 583.4
(1.2) 		694
(3) 		324.7
(-2.9) 		320.5
(-3) 		532
(0.4) 		502.1
(-0.1) 		374
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21494
Sequence Type Exemplar sequence
Representative Public ID CEK098DXR NCBI
Target Description CEK098DXR_rc /REP_DB=TREMBL Accession /GB=D72390 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070273 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-66) (lin-66) mRNA, complete cds. 11/11 None
B0513.1 ENSEMBL cdna:known chromosome:CEL140:IV:13888058:13893950:1 gene:B0513.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13893603-13893931(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-66
Ensembl B0513.1
Entrez Gene 178354 Entrez gene
SwissProt O62020 EMBL-EBI
WormBase CE15557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05113 Hypothetical protein B0513.1 [Caenorhabditis elegans] ref|NP_502674.1| abnormal cell LINeage family member (lin-66) [Caenorhabditis elegans] 0.0
blast CAE74652 Hypothetical protein CBG22449 [Caenorhabditis briggsae] 0.0
blast CAE61435 Hypothetical protein CBG05318 [Caenorhabditis briggsae] 1.0E-97
Sequence
Target Sequence 
>C. ELEGANS:174959_AT
atatctttaaaatccaccaccatcctttgcaatattatctttaaatatcacctttttcca
taccatgtttgccttttcaactccccttacttttttacaagttggctctcactcgttcat
ttctcaccccctgtttggtacctgtttaaacgaaagtgtccttttctctcaacacaaacc
actgcaactaaaaaccccaacccattcactcgagttttccacgattgcacacgattttta
atttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCTTTAAAATCCACCACCATCC 673 19 45 Antisense
CCACCACCATCCTTTGCAATATTAT 673 273 58 Antisense
ACCATCCTTTGCAATATTATCTTTA 241 87 63 Antisense
TAAATATCACCTTTTTCCATACCAT 700 641 86 Antisense
TTCCATACCATGTTTGCCTTTTCAA 400 701 100 Antisense
TTTTACAAGTTGGCTCTCACTCGTT 35 677 137 Antisense
ACGAAAGTGTCCTTTTCTCTCAACA 69 93 194 Antisense
TCTCAACACAAACCACTGCAACTAA 389 611 211 Antisense
CCATTCACTCGAGTTTTCCACGATT 601 269 246 Antisense
GAGTTTTCCACGATTGCACACGATT 79 399 256 Antisense
ACGATTGCACACGATTTTTAATTTG 212 95 265 Antisense
Sequence Source Affymetrix Proprietary Database