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[174958_at]

Description CEK017DYR_rc /REP_DB=TREMBL Accession /GB=D32469 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 30      6grp_total > 26      4grp_total > 39      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1031
1 2 3 4 range
A 1410.5
(3)
P 		535.8
(-3)
P 		599.1
(-2.6)
P 		833
(-1)
P 		875
B 1520.6
(3)
P 		566.9
(-2.5)
P 		489.2
(-3)
P 		995.5
(-0.1)
P 		1031
C 1206.1
(3)
P 		667.1
(-2)
P 		554.8
(-3)
P 		741.9
(-1.3)
P 		651
avr 1379.1
(3) 		589.9
(-2.7) 		547.7
(-3) 		856.8
(-0.8) 		831

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1121
1 2 3 4 5 6 range
A 1246.6
(2.9)
P 		1265.2
(3)
P 		489.5
(-3)
P 		493.2
(-3)
P 		772.3
(-0.8)
P 		660.9
(-1.7)
P 		776
B 1096.7
(0.4)
P 		1513.4
(3)
P 		569.6
(-3)
P 		714.9
(-2.1)
P 		743
(-1.9)
P 		621.1
(-2.7)
P 		944
C 1610.9
(3)
P 		1229.1
(0.5)
P 		789.6
(-2.3)
P 		689.6
(-3)
P 		694.8
(-3)
P 		740.3
(-2.7)
P 		921
avr 1318.1
(2.9) 		1335.9
(3) 		616.2
(-3) 		632.6
(-2.9) 		736.7
(-2) 		674.1
(-2.5) 		720
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 513.6
(3)
P 		116.3
(-3)
P 		156.6
(-2.4)
P 		121.9
(-2.9)
P 		397
B 484.9
(3)
P 		140
(-2.6)
P 		113.4
(-3)
P 		212.1
(-1.4)
P 		372
C 399.3
(3)
P 		191.8
(-1.5)
P 		193.4
(-1.5)
P 		125.1
(-3)
P 		274
avr 465.9
(3) 		149.4
(-3) 		154.5
(-2.9) 		153
(-2.9) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 229.8
(-0.8)
P 		450
(3)
P 		106.6
(-3)
P 		125.1
(-2.7)
P 		233
(-0.8)
P 		160.9
(-2.1)
P 		343
B 381.6
(1)
P 		503.7
(3)
P 		138.3
(-3)
P 		189.3
(-2.2)
P 		301.9
(-0.3)
P 		231.6
(-1.5)
P 		365
C 597.1
(3)
P 		375
(0.1)
P 		201
(-2.2)
P 		138.7
(-3)
P 		224.8
(-1.9)
P 		247.8
(-1.6)
P 		458
avr 402.8
(2.2) 		442.9
(3) 		148.6
(-3) 		151
(-3) 		253.2
(-0.9) 		213.4
(-1.7) 		294
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20609
Sequence Type Exemplar sequence
Representative Public ID CEK017DYR NCBI
Target Description CEK017DYR_rc /REP_DB=TREMBL Accession /GB=D32469 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52A11.4a ENSEMBL cdna:known chromosome:CEL140:II:10738558:10766552:-1 gene:C52A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10738564-10738867(-) 94.06 100.0
Public Domain and Genome References
Ensembl C52A11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86789 Hypothetical protein C52A11.4a [Caenorhabditis elegans] emb|CAA86769.3| Hypothetical protein C52A11.4a [Caenorhabditis elegans] ref|NP_001022038.1| Multiple PDZ domain protein family member (mpz-1) [Caenorhabditis elegans] 0.0
blast CAE59603 Hypothetical protein CBG03011 [Caenorhabditis briggsae] 0.0
blast CAE48511 Hypothetical protein C52A11.4b [Caenorhabditis elegans] emb|CAE48495.1| Hypothetical protein C52A11.4b [Caenorhabditis elegans] ref|NP_001022039.1| Multiple PDZ domain protein family member (mpz-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-12
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.1E-17
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.9E-7
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 5.0E-14
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-10
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 3.2E-21
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.7E-8
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.1E-18
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.7E-21
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.3E-11
Sequence
Target Sequence 
>C. ELEGANS:174958_AT
ggcgagcaattttatgcattttgtaggcagtcaattatgtctcgcctcttctgtcaaact
ctgcagggtacttttttgaaatgtttttctttttgaagttttaccgtttttttttttgaa
aactattcaattcgttccaaacatgctgaatatctagtcgttttacacccatttgcaaag
tatgcggtgatattatttccttaagtttagtgttctatcttttagtccttattttggatc
tttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGAGCAATTTTATGCATTTTGTA 40 543 31 Antisense
GGCAGTCAATTATGTCTCGCCTCTT 602 535 56 Antisense
CCTCTTCTGTCAAACTCTGCAGGGT 130 269 75 Antisense
ACTCTGCAGGGTACTTTTTTGAAAT 53 101 88 Antisense
ATTCAATTCGTTCCAAACATGCTGA 249 13 155 Antisense
CATGCTGAATATCTAGTCGTTTTAC 226 211 172 Antisense
GTCGTTTTACACCCATTTGCAAAGT 663 467 187 Antisense
GTATGCGGTGATATTATTTCCTTAA 518 455 210 Antisense
TATTTCCTTAAGTTTAGTGTTCTAT 499 661 224 Antisense
AGTGTTCTATCTTTTAGTCCTTATT 623 59 239 Antisense
TAGTCCTTATTTTGGATCTTTCATT 699 651 253 Antisense
Sequence Source Affymetrix Proprietary Database