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[174957_s_at]

Description CEK134A9R_rc /REP_DB=TREMBL Accession /GB=D65282 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134a9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      6grp_highest_nonorm > 93      6grp_total > 67      4grp_total > 45      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 143.6
(3)
P 		75
(-1.2)
A 		63.2
(-2)
A 		46.4
(-3)
A 		97
B 54.1
(-3)
A 		108.5
(3)
A 		73.7
(-0.8)
A 		94
(1.4)
A 		54
C 92.4
(1.9)
A 		98.6
(3)
A 		79.3
(-0.3)
A 		63.3
(-3)
A 		35
avr 96.7
(3) 		94
(2.4) 		72.1
(-2.1) 		67.9
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 959
1 2 3 4 5 6 range
A 188.5
(-2.2)
P 		134.8
(-2.7)
P 		154.1
(-2.5)
P 		92.1
(-3)
P 		122
(-2.8)
P 		847.5
(3)
P 		755
B 181.3
(-2.4)
P 		180
(-2.4)
P 		201.3
(-2.3)
P 		169.4
(-2.5)
P 		89.1
(-3)
P 		1007.7
(3)
P 		919
C 127.7
(-3)
P 		164.7
(-2.7)
P 		161.7
(-2.7)
P 		214.1
(-2.4)
P 		121.5
(-3)
P 		1048.2
(3)
P 		927
avr 165.8
(-2.6) 		159.8
(-2.7) 		172.4
(-2.6) 		158.5
(-2.7) 		110.9
(-3) 		967.8
(3) 		857
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 52.3
(3)
P 		16.3
(-1.7)
A 		16.5
(-1.7)
A 		6.8
(-3)
A 		46
B 17.2
(-2.9)
A 		26.8
(3)
A 		17.1
(-3)
A 		20
(-1.2)
A 		10
C 30.6
(3)
A 		28.4
(2.3)
A 		27.6
(2.1)
A 		10.7
(-3)
A 		20
avr 33.4
(3) 		23.8
(0.2) 		20.4
(-0.7) 		12.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 34.8
(-2.6)
P 		47.9
(-2.2)
P 		33.6
(-2.7)
P 		23.4
(-3)
P 		36.8
(-2.6)
P 		206.3
(3)
P 		183
B 63.1
(-2.5)
P 		59.9
(-2.6)
P 		48.9
(-2.8)
P 		44.9
(-2.8)
P 		36.2
(-3)
P 		375.8
(3)
P 		340
C 47.3
(-2.8)
P 		50.2
(-2.8)
P 		41.2
(-3)
P 		43
(-2.9)
P 		39.3
(-3)
P 		350.9
(3)
P 		312
avr 48.4
(-2.8) 		52.7
(-2.7) 		41.2
(-2.9) 		37.1
(-3) 		37.4
(-3) 		311
(3) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174957_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21955
Sequence Type Exemplar sequence
Representative Public ID CEK134A9R NCBI
Target Description CEK134A9R_rc /REP_DB=TREMBL Accession /GB=D65282 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071040 NCBI Caenorhabditis elegans F52F10.3 (F52F10.3) mRNA, complete cds. 11/11 A 
SNAP00000019918 ENSEMBL cdna:SNAP chromosome:CEL140:V:1538263:1541545:-1 11/11 None
GENEFINDER00000019923 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1538263:1541545:-1 11/11 None
F52F10.3 ENSEMBL cdna:known chromosome:CEL140:V:1538194:1541653:-1 gene:F52F10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1538216-1538679(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52F10.3
Entrez Gene 178643 Entrez gene
SwissProt Q9UAQ8 EMBL-EBI
WormBase CE19883 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638003_AT dm
DROSGENOME1:145376_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69231 Hypothetical protein F52F10.3 [Caenorhabditis elegans] ref|NP_503441.1| F52F10.3 [Caenorhabditis elegans] 0.0
blast CAE62486 Hypothetical protein CBG06590 [Caenorhabditis briggsae] 0.0
blast AAC69230 Hypothetical protein F52F10.4 [Caenorhabditis elegans] ref|NP_503442.1| F52F10.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503441.1 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
F52F10.3 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
SNAP00000019918 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
GENEFINDER00000019923 12 173-195,210-230,243-262,282-304,328-350,397-419,421-443,469-491,498-520,540-562,583-605,609-631
Sequence
Target Sequence 
>C. ELEGANS:174957_S_AT
ggaggagctctacattatacgtctgcttggcacgtgtttctctatatttcaattcctgca
acagtcctctcatttgtgtttgctttcttctggagttgtcttttcgaaatgccaatatta
aaaaaatgttgatcgaatcgttagttggaagatctcaaatgccacctgccaaaacaagtc
tcaaggaaaaaatcactgaggaaacagaagcatcctacgaggatatggagacggggaaaa
ttcaaagctgcaagcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAGCTCTACATTATACGTCTG 629 515 61 Antisense
ATACGTCTGCTTGGCACGTGTTTCT 444 23 77 Antisense
ACGTGTTTCTCTATATTTCAATTCC 530 95 92 Antisense
ATTTCAATTCCTGCAACAGTCCTCT 544 13 106 Antisense
ACAGTCCTCTCATTTGTGTTTGCTT 43 109 121 Antisense
CTCATTTGTGTTTGCTTTCTTCTGG 637 229 129 Antisense
TGCTTTCTTCTGGAGTTGTCTTTTC 209 579 141 Antisense
GGAGTTGTCTTTTCGAAATGCCAAT 325 517 152 Antisense
TGGAAGATCTCAAATGCCACCTGCC 247 547 206 Antisense
AAATGCCACCTGCCAAAACAAGTCT 264 119 217 Antisense
GGGGAAAATTCAAAGCTGCAAGCTA 520 497 293 Antisense
Sequence Source Affymetrix Proprietary Database