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[174956_s_at]

Description CEK010CXR_rc /REP_DB=TREMBL Accession /GB=D27390 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 78      6grp_total > 49      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1887
1 2 3 4 range
A 1610.2
(-1.5)
P 		1413.8
(-3)
P 		1509.4
(-2.3)
P 		2214.3
(3)
P 		801
B 1443
(-3)
P 		1484
(-2.9)
P 		1476.4
(-2.9)
P 		3301.1
(3)
P 		1858
C 1566.5
(-3)
P 		1641.4
(-2.5)
P 		1699.2
(-2.2)
P 		2532.2
(3)
P 		966
avr 1539.9
(-2.9) 		1513.1
(-3) 		1561.7
(-2.8) 		2682.5
(3) 		1169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1341
1 2 3 4 5 6 range
A 1652.6
(2.7)
P 		1565.3
(1.8)
P 		1234.2
(-1.6)
P 		1103
(-3)
P 		1676.8
(3)
P 		1607.7
(2.3)
P 		574
B 1867.1
(1.4)
P 		1719
(0.1)
P 		1438.9
(-2.4)
P 		1375.1
(-3)
P 		1532.4
(-1.6)
P 		2042.8
(3)
P 		668
C 1861.7
(1.8)
P 		1328.3
(-0.6)
P 		1267.2
(-0.8)
P 		784.7
(-3)
P 		1593.4
(0.6)
P 		2125.2
(3)
P 		1341
avr 1793.8
(2.1) 		1537.5
(0.2) 		1313.4
(-1.4) 		1087.6
(-3) 		1600.9
(0.7) 		1925.2
(3) 		838
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 586.3
(3)
P 		306.9
(-3)
P 		394.6
(-1.1)
P 		324.1
(-2.6)
P 		279
B 460.2
(-1)
P 		366.5
(-2.6)
P 		342.1
(-3)
P 		703.5
(3)
P 		361
C 518.5
(0.3)
P 		471.9
(-1.4)
P 		592.2
(3)
P 		427
(-3)
P 		165
avr 521.7
(3) 		381.8
(-3) 		443
(-0.4) 		484.9
(1.4) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 304.6
(-2.3)
P 		556.7
(3)
P 		268.8
(-3)
P 		279.8
(-2.8)
P 		506
(1.9)
P 		391.4
(-0.4)
P 		288
B 649.7
(1.4)
P 		572.2
(0.2)
P 		349.4
(-3)
P 		364.2
(-2.8)
P 		622.6
(1)
P 		761.8
(3)
P 		412
C 690.1
(2.8)
P 		405.3
(-0.3)
P 		322.5
(-1.2)
P 		157.8
(-3)
P 		515.6
(0.9)
P 		711.4
(3)
P 		554
avr 548.1
(1.8) 		511.4
(1.1) 		313.6
(-2.2) 		267.3
(-3) 		548.1
(1.8) 		621.5
(3) 		354
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174956_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20741
Sequence Type Exemplar sequence
Representative Public ID CEK010CXR NCBI
Target Description CEK010CXR_rc /REP_DB=TREMBL Accession /GB=D27390 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062986 NCBI Caenorhabditis elegans T13C2.6a (T13C2.6) mRNA, complete cds. 11/11 None
T13C2.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:6783355:6788200:1 gene:T13C2.6 11/11 A 
T13C2.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:6783357:6788200:1 gene:T13C2.6 11/11 A 
T13C2.6a.3 ENSEMBL cdna:known chromosome:CEL140:II:6783360:6788461:1 gene:T13C2.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174116 2 1 NM_062986 174955_at (11), 174956_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6787787-6788174(+) 100.0 100.0
Public Domain and Genome References
Ensembl T13C2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS80338 Hypothetical protein T13C2.6a [Caenorhabditis elegans] ref|NP_495387.2| T13C2.6a [Caenorhabditis elegans] 0.0
blast AAS80339 Hypothetical protein T13C2.6b [Caenorhabditis elegans] ref|NP_872023.2| T13C2.6b [Caenorhabditis elegans] 0.0
blast T16860 hypothetical protein T13C2.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 5.8E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.8E-16
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.9E-12
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.7E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.2E-16
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.5E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.3E-4
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 4.5E-12
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 7.8E-15
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495387.2 1 819-841
T13C2.6a.2 1 819-841
T13C2.6a.1 1 819-841
T13C2.6a.3 1 819-841
Sequence
Target Sequence 
>C. ELEGANS:174956_S_AT
gtagatccaaactgtgaaaatttccaaaaatcctccaaattttgcgtgtttatctattcc
gaatggtttggatagtattttgcatcgagtctagatttcatgtattcattgctttcatta
ttctcattgctatatcattattttctgtgtgctccatccaattcacccggttatcgagct
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGATCCAAACTGTGAAAATTTCC 685 435 66 Antisense
AATCCTCCAAATTTTGCGTGTTTAT 472 167 94 Antisense
AATTTTGCGTGTTTATCTATTCCGA 164 175 103 Antisense
TGCGTGTTTATCTATTCCGAATGGT 478 583 108 Antisense
GTTTATCTATTCCGAATGGTTTGGA 70 449 113 Antisense
GATTTCATGTATTCATTGCTTTCAT 135 429 159 Antisense
GTATTCATTGCTTTCATTATTCTCA 368 453 167 Antisense
TTGCTTTCATTATTCTCATTGCTAT 678 703 174 Antisense
TATTCTCATTGCTATATCATTATTT 110 665 184 Antisense
ATCATTATTTTCTGTGTGCTCCATC 151 31 199 Antisense
TCCAATTCACCCGGTTATCGAGCTT 353 587 222 Antisense
Sequence Source Affymetrix Proprietary Database