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[174955_at]

Description CEK010CXR_rc /REP_DB=TREMBL Accession /GB=D27390 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 59      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 77      6grp_total > 39      4grp_total > 01      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1164
1 2 3 4 range
A 1398.4
(-0.5)
P 		1272.4
(-3)
P 		1424.2
(0)
P 		1574.8
(3)
P 		302
B 1265.1
(-1.1)
P 		1120
(-2.5)
P 		1062
(-3)
P 		1716.7
(3)
P 		655
C 1052.7
(-3)
P 		1091.3
(-2.8)
P 		1343.4
(-1.5)
P 		2216.6
(3)
P 		1164
avr 1238.7
(-2.3) 		1161.2
(-3) 		1276.5
(-2) 		1836
(3) 		675

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1249
1 2 3 4 5 6 range
A 1279.2
(-0.9)
P 		1386.5
(0.7)
P 		1328.9
(-0.2)
P 		1136.3
(-3)
P 		1495.6
(2.3)
P 		1542.2
(3)
P 		406
B 1596.8
(2.2)
P 		1601.3
(2.2)
P 		640.9
(-3)
P 		1421.7
(1.3)
P 		1410.7
(1.2)
P 		1742.2
(3)
P 		1101
C 1889.7
(3)
P 		1506.3
(-0)
P 		1144.3
(-2.9)
P 		1134.8
(-3)
P 		1623.2
(0.9)
P 		1235.5
(-2.2)
P 		755
avr 1588.6
(3) 		1498
(2) 		1038
(-3) 		1230.9
(-0.9) 		1509.8
(2.1) 		1506.6
(2.1) 		551
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 509.2
(3)
P 		276.2
(-2)
P 		372.3
(0.1)
P 		230.5
(-3)
P 		279
B 403.4
(3)
P 		276.6
(-1.8)
P 		246.1
(-3)
P 		365.8
(1.6)
P 		157
C 348.5
(-1.7)
P 		313.8
(-3)
P 		468.2
(3)
P 		373.8
(-0.7)
P 		154
avr 420.4
(3) 		288.9
(-3) 		362.2
(0.3) 		323.4
(-1.4) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 235.8
(-3)
P 		493.1
(3)
P 		289.4
(-1.8)
P 		288.2
(-1.8)
P 		451.3
(2)
P 		375.5
(0.3)
P 		257
B 555.6
(1.9)
P 		533
(1.6)
P 		155.6
(-3)
P 		376.6
(-0.3)
P 		573.1
(2.1)
P 		649.7
(3)
P 		494
C 700.4
(3)
P 		459.6
(-0.1)
P 		291.2
(-2.2)
P 		228.2
(-3)
P 		525.2
(0.8)
P 		413.6
(-0.6)
P 		472
avr 497.3
(2.6) 		495.2
(2.5) 		245.4
(-3) 		297.7
(-1.8) 		516.5
(3) 		479.6
(2.2) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20741
Sequence Type Exemplar sequence
Representative Public ID CEK010CXR NCBI
Target Description CEK010CXR_rc /REP_DB=TREMBL Accession /GB=D27390 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062986 NCBI Caenorhabditis elegans T13C2.6a (T13C2.6) mRNA, complete cds. 11/11 None
T13C2.6a.2 ENSEMBL cdna:known chromosome:CEL140:II:6783355:6788200:1 gene:T13C2.6 11/11 A 
T13C2.6a.1 ENSEMBL cdna:known chromosome:CEL140:II:6783357:6788200:1 gene:T13C2.6 11/11 A 
T13C2.6a.3 ENSEMBL cdna:known chromosome:CEL140:II:6783360:6788461:1 gene:T13C2.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174116 2 1 NM_062986 174955_at (11), 174956_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6787787-6788174(+) 100.0 100.0
Public Domain and Genome References
Ensembl T13C2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS80338 Hypothetical protein T13C2.6a [Caenorhabditis elegans] ref|NP_495387.2| T13C2.6a [Caenorhabditis elegans] 0.0
blast AAS80339 Hypothetical protein T13C2.6b [Caenorhabditis elegans] ref|NP_872023.2| T13C2.6b [Caenorhabditis elegans] 0.0
blast T16860 hypothetical protein T13C2.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 5.8E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.8E-16
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.9E-12
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.7E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.2E-16
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.5E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.3E-4
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 4.5E-12
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 7.8E-15
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495387.2 1 819-841
T13C2.6a.2 1 819-841
T13C2.6a.1 1 819-841
T13C2.6a.3 1 819-841
Sequence
Target Sequence 
>C. ELEGANS:174955_AT
actcaaatctgagaaatcactgtgaagacgtgtagatccaaactgtgaaaatttccaaaa
atcctccaaattttgcgtgtttatctattccgaatggtttggatagtattttgcatcgag
tctagatttcatgtattcattgctttcattattctcattgctatatcattattttctgtg
tgctccatccaattcacccggttatcgagctttttccaaatgtttttatgtagtatttcc
tcgttttttctactctgaagctggtaattttgagttttcctgactgtcgacccccgagaa
ctgatgcatatacccttgtctatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCAAATCTGAGAAATCACTGTGA 94 101 35 Antisense
ATCACTGTGAAGACGTGTAGATCCA 139 29 50 Antisense
GGTTTGGATAGTATTTTGCATCGAG 518 505 130 Antisense
TTGCATCGAGTCTAGATTTCATGTA 657 701 145 Antisense
CGGTTATCGAGCTTTTTCCAAATGT 31 245 233 Antisense
TATCGAGCTTTTTCCAAATGTTTTT 403 659 237 Antisense
ATGTTTTTATGTAGTATTTCCTCGT 506 47 254 Antisense
TATGTAGTATTTCCTCGTTTTTTCT 184 655 261 Antisense
TTCCTCGTTTTTTCTACTCTGAAGC 132 699 271 Antisense
GACCCCCGAGAACTGATGCATATAC 16 383 323 Antisense
CTGATGCATATACCCTTGTCTATCT 356 239 335 Antisense
Sequence Source Affymetrix Proprietary Database