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[174954_at]

Description CEK042FXR_rc /REP_DB=TREMBL Accession /GB=D34208 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk42f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 20      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 75      6grp_total > 30      4grp_total > 30      6grp_highest_sub > 02_03      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 897.2
(3)
P 		681.6
(-3)
P 		682
(-3)
P 		802.6
(0.4)
P 		216
B 970.9
(3)
P 		714.4
(-1.6)
P 		635.5
(-3)
P 		807.5
(0.1)
P 		335
C 970.4
(3)
P 		736.7
(-1.6)
P 		665
(-3)
P 		817.6
(-0)
P 		305
avr 946.2
(3) 		710.9
(-1.9) 		660.8
(-3) 		809.2
(0.1) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 686
1 2 3 4 5 6 range
A 1038.1
(3)
P 		932.4
(0.9)
P 		950.4
(1.3)
P 		791.3
(-1.8)
P 		887.1
(0)
P 		732.4
(-3)
P 		306
B 1108.2
(1.5)
P 		1251.1
(3)
P 		1250.6
(3)
P 		1127.6
(1.7)
P 		693.4
(-3)
P 		864.7
(-1.2)
P 		558
C 773.1
(-1.1)
P 		1210.8
(3)
P 		1095
(1.9)
P 		1198.4
(2.9)
P 		564.7
(-3)
P 		891.3
(0)
P 		646
avr 973.1
(0.7) 		1131.4
(3) 		1098.7
(2.5) 		1039.1
(1.7) 		715.1
(-3) 		829.5
(-1.4) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 326.7
(3)
P 		148
(-2.1)
P 		178.3
(-1.3)
P 		117.5
(-3)
P 		209
B 309.6
(3)
P 		176.4
(-1.9)
P 		147.3
(-3)
P 		172.1
(-2.1)
P 		162
C 321.2
(3)
P 		211.8
(-0.6)
P 		231.8
(0.1)
P 		137.9
(-3)
P 		183
avr 319.2
(3) 		178.7
(-1.8) 		185.8
(-1.5) 		142.5
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 191.4
(-2.5)
P 		331.6
(3)
P 		207
(-1.9)
P 		200.7
(-2.1)
P 		267.7
(0.5)
P 		178.3
(-3)
P 		153
B 385.6
(1.6)
P 		416.4
(3)
P 		303.7
(-2)
P 		298.7
(-2.2)
P 		281.7
(-3)
P 		322.5
(-1.2)
P 		135
C 286.5
(0.3)
P 		369.5
(3)
P 		278.7
(0.1)
P 		241
(-1.1)
P 		182.7
(-3)
P 		298.4
(0.7)
P 		187
avr 287.8
(-1) 		372.5
(3) 		263.1
(-2.1) 		246.8
(-2.9) 		244
(-3) 		266.4
(-2) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20792
Sequence Type Exemplar sequence
Representative Public ID CEK042FXR NCBI
Target Description CEK042FXR_rc /REP_DB=TREMBL Accession /GB=D34208 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk42f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027336 NCBI Caenorhabditis elegans NFI (Nuclear Factor I) family member (nfi-1) (nfi-1) mRNA, complete cds. 11/11 None
ZK1290.4c ENSEMBL cdna:known chromosome:CEL140:II:7538117:7542927:1 gene:ZK1290.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174225 3 1 NM_001027336 174954_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7542567-7542900(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1290.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW57823 Nfi (nuclear factor i) family protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022507.1| NFI (Nuclear Factor I) family member (nfi-1) [Caenorhabditis elegans] 0.0
blast AAW57822 Nfi (nuclear factor i) family protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022506.1| NFI (Nuclear Factor I) family member (nfi-1) [Caenorhabditis elegans] 0.0
blast AAN60509 Nfi (nuclear factor i) family protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022505.1| NFI (Nuclear Factor I) family member (nfi-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003619 EMBL-EBI Dwarfin protein, domain A 6.5E-40
Sequence
Target Sequence 
>C. ELEGANS:174954_AT
tcttcaaaacattttctccgtctgtgacgtcataatctatttttccgaacctcttttgaa
aaccaaaatccacaaaaaaatcaattgtttacggggccacacattttcccttttcttttc
ttcaccgtcacctctttatcttgtaaatctgaaaaactttgaaaaaacgtcgtagctatg
cacaattgtaatcaccacttccagtttcccagtgttttccttttatgttttttttgcgta
tttgaacctcatgtttgcatttcttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCAAAACATTTTCTCCGTCTGT 558 615 46 Antisense
CAAAACATTTTCTCCGTCTGTGACG 331 191 50 Antisense
ATTTTCTCCGTCTGTGACGTCATAA 38 15 56 Antisense
GTGACGTCATAATCTATTTTTCCGA 206 483 69 Antisense
CAATTGTTTACGGGGCCACACATTT 183 177 127 Antisense
CCGTCACCTCTTTATCTTGTAAATC 183 265 170 Antisense
AAAACGTCGTAGCTATGCACAATTG 408 129 209 Antisense
TGCACAATTGTAATCACCACTTCCA 438 577 224 Antisense
AATTGTAATCACCACTTCCAGTTTC 495 179 229 Antisense
TTTTTTTGCGTATTTGAACCTCATG 613 673 274 Antisense
GAACCTCATGTTTGCATTTCTTGTG 63 347 289 Antisense
Sequence Source Affymetrix Proprietary Database