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[174952_s_at]

Description CEK123C9R_rc /REP_DB=TREMBL Accession /GB=D66771 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk123c9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 11      6grp_total > 08      4grp_total > 61      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 846
1 2 3 4 range
A 1330.2
(3)
P 		1146.7
(1.7)
P 		993.9
(0.6)
P 		484.3
(-3)
P 		846
B 1018.1
(3)
P 		834.1
(-0.6)
P 		736.7
(-2.5)
P 		709
(-3)
P 		309
C 1260.1
(3)
P 		829.6
(-0.4)
P 		1067.6
(1.5)
P 		489.2
(-3)
P 		771
avr 1202.8
(3) 		936.8
(0.5) 		932.7
(0.5) 		560.8
(-3) 		642

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1685
1 2 3 4 5 6 range
A 2421.2
(3)
P 		1657.3
(0.1)
P 		1165.1
(-1.7)
P 		1373.6
(-0.9)
P 		1163.4
(-1.7)
P 		816.1
(-3)
P 		1605
B 1847.9
(3)
P 		1322.7
(0.2)
P 		936.9
(-1.9)
P 		1608.2
(1.7)
P 		736.5
(-3)
P 		842.8
(-2.4)
P 		1111
C 2359.4
(3)
P 		1344.7
(-1.1)
P 		1787.1
(0.7)
P 		1156.2
(-1.9)
P 		1269.5
(-1.4)
P 		879
(-3)
P 		1480
avr 2209.5
(3) 		1441.6
(-0.4) 		1296.4
(-1) 		1379.3
(-0.7) 		1056.5
(-2.1) 		846
(-3) 		1364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 484.3
(3)
P 		248.9
(-0.4)
P 		259.8
(-0.3)
P 		70.9
(-3)
P 		413
B 324.7
(3)
P 		206
(-1.1)
P 		170.7
(-2.3)
P 		151.1
(-3)
P 		174
C 417.1
(3)
P 		238.5
(-0.2)
P 		372.1
(2.2)
P 		82.5
(-3)
P 		335
avr 408.7
(3) 		231.1
(-0.5) 		267.5
(0.2) 		101.5
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 676
1 2 3 4 5 6 range
A 446.3
(0.8)
P 		589.4
(3)
P 		253.7
(-2.2)
P 		348.4
(-0.7)
P 		351.1
(-0.7)
P 		198.7
(-3)
P 		391
B 643
(3)
P 		440.3
(0.1)
P 		227.5
(-3)
P 		426
(-0.1)
P 		299.2
(-2)
P 		314.3
(-1.7)
P 		416
C 874.5
(3)
P 		410.3
(-1.3)
P 		454.9
(-0.9)
P 		232.5
(-3)
P 		410.8
(-1.3)
P 		294.2
(-2.4)
P 		642
avr 654.6
(3) 		480
(0.3) 		312
(-2.3) 		335.6
(-2) 		353.7
(-1.7) 		269.1
(-3) 		386
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174952_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20402
Sequence Type Exemplar sequence
Representative Public ID CEK123C9R NCBI
Target Description CEK123C9R_rc /REP_DB=TREMBL Accession /GB=D66771 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk123c9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026696(11), NM_061212(10), NM_061213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026696 NCBI Caenorhabditis elegans ZK337.1c (ZK337.1) mRNA, complete cds. 11/11 None
NM_061212 NCBI Caenorhabditis elegans ZK337.1b (ZK337.1) mRNA, complete cds. 10/11 A 
NM_061213 NCBI Caenorhabditis elegans ZK337.1a (ZK337.1) mRNA, complete cds. 11/11 A 
SNAP00000024739 ENSEMBL cdna:SNAP chromosome:CEL140:I:15002891:15009571:1 11/11 None
GENEFINDER00000024765 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15002891:15009571:1 11/11 None
ZK337.1c.2 ENSEMBL cdna:known chromosome:CEL140:I:15001939:15009763:1 gene:ZK337.1 11/11 None
ZK337.1c.1 ENSEMBL cdna:known chromosome:CEL140:I:15002889:15009787:1 gene:ZK337.1 11/11 None
ZK337.1a ENSEMBL cdna:known chromosome:CEL140:I:15002891:15009571:1 gene:ZK337.1 11/11 A 
ZK337.1b ENSEMBL cdna:known chromosome:CEL140:I:15002891:15009787:1 gene:ZK337.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15009101-15009703(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK337.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98728 Hypothetical protein ZK337.1c [Caenorhabditis elegans] ref|NP_001021867.1| ZK337.1c [Caenorhabditis elegans] 0.0
blast CAB05006 Hypothetical protein ZK337.1a [Caenorhabditis elegans] ref|NP_493614.1| ZK337.1a [Caenorhabditis elegans] 0.0
blast CAB05007 Hypothetical protein ZK337.1b [Caenorhabditis elegans] ref|NP_493613.2| ZK337.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 3.2E-112
Pfam IPR002890 EMBL-EBI Alpha-2-macroglobulin, N-terminal 3.1E-25
Pfam IPR002890 EMBL-EBI Alpha-2-macroglobulin, N-terminal 1.1E-17
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 3.2E-112
Pfam IPR001599 EMBL-EBI Alpha-2-macroglobulin 3.2E-112
Sequence
Target Sequence 
>C. ELEGANS:174952_S_AT
gtctctcgttatactctgatgtcacttatcaagttgccgatcaaaaacctgccaacttcc
gattagtggattactacgatccggaggagcagctcaaaatgacatacgccgccaagcaaa
cacgatcgctgcaagagaaatgtggggaagactgttggccaccgatttccccatcactgc
ctccatttgacgagtcgacagtaacaggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCTCGTTATACTCTGATGTCAC 704 469 51 Antisense
CTGATGTCACTTATCAAGTTGCCGA 352 239 66 Antisense
GATCAAAAACCTGCCAACTTCCGAT 493 407 89 Antisense
ACCTGCCAACTTCCGATTAGTGGAT 323 87 97 Antisense
GTGGATTACTACGATCCGGAGGAGC 656 489 116 Antisense
TCAAAATGACATACGCCGCCAAGCA 709 629 144 Antisense
CCGCCAAGCAAACACGATCGCTGCA 32 253 159 Antisense
GATCGCTGCAAGAGAAATGTGGGGA 54 415 174 Antisense
GGAAGACTGTTGGCCACCGATTTCC 273 531 196 Antisense
TCACTGCCTCCATTTGACGAGTCGA 444 625 224 Antisense
TTGACGAGTCGACAGTAACAGGCAC 636 701 237 Antisense
Sequence Source Affymetrix Proprietary Database