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[174951_at]

Description CEK028HXR_rc /REP_DB=TREMBL Accession /GB=D33297 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 91      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 65      6grp_total > 91      4grp_total > 23      6grp_highest_sub > 04_05      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1042
1 2 3 4 range
A 1037.7
(3)
P 		385.1
(-3)
P 		553
(-1.5)
P 		1017.2
(2.8)
P 		653
B 1427.5
(3)
P 		824.2
(-2)
P 		704.5
(-3)
P 		1291.9
(1.9)
P 		723
C 1204.3
(3)
P 		925.7
(-1.5)
P 		836
(-3)
P 		1137.7
(1.9)
P 		368
avr 1223.2
(3) 		711.7
(-2.8) 		697.8
(-3) 		1148.9
(2.2) 		525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1237
1 2 3 4 5 6 range
A 1170.8
(0.7)
P 		1111
(0.1)
P 		790.4
(-3)
P 		1017.5
(-0.8)
P 		1413.5
(3)
P 		931.6
(-1.6)
P 		623
B 1052.7
(-1.3)
P 		857.4
(-2.2)
P 		702.6
(-3)
P 		1939.7
(3)
P 		1286.1
(-0.2)
P 		971.5
(-1.7)
P 		1237
C 880.8
(-1.9)
P 		806.7
(-2.7)
P 		1162.9
(1.1)
P 		777.9
(-3)
P 		1340.3
(3)
P 		872.8
(-2)
P 		562
avr 1034.8
(-1.1) 		925
(-2.5) 		885.3
(-3) 		1245
(1.7) 		1346.6
(3) 		925.3
(-2.5) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 377.8
(3)
P 		83.6
(-3)
P 		144.6
(-1.8)
P 		148.9
(-1.7)
P 		294
B 455.2
(3)
P 		203.6
(-2.2)
P 		163.2
(-3)
P 		275.3
(-0.7)
P 		292
C 398.7
(3)
P 		266.2
(-0.8)
P 		291.4
(-0.1)
P 		191.8
(-3)
P 		207
avr 410.6
(3) 		184.5
(-3) 		199.7
(-2.6) 		205.3
(-2.4) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 215.8
(-2)
P 		395.1
(2.3)
P 		172.1
(-3)
P 		258.1
(-1)
P 		426.5
(3)
P 		226.8
(-1.7)
P 		254
B 366.3
(0.3)
P 		285.4
(-1)
P 		170.6
(-3)
P 		513.8
(2.9)
P 		522.5
(3)
P 		362.3
(0.3)
P 		352
C 326.5
(0.7)
P 		246.1
(-1.1)
P 		296
(0)
P 		156.4
(-3)
P 		433.7
(3)
P 		292.2
(-0.1)
P 		277
avr 302.9
(-0.8) 		308.9
(-0.7) 		212.9
(-3) 		309.4
(-0.7) 		460.9
(3) 		293.8
(-1) 		248
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22133
Sequence Type Exemplar sequence
Representative Public ID CEK028HXR NCBI
Target Description CEK028HXR_rc /REP_DB=TREMBL Accession /GB=D33297 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C34D10.2 ENSEMBL cdna:known chromosome:CEL140:X:8017961:8027246:1 gene:C34D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8026426-8026780(+) 100.0 100.0
Public Domain and Genome References
Ensembl C34D10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68423 Hypothetical protein C34D10.2 [Caenorhabditis elegans] ref|NP_509350.2| C34D10.2 [Caenorhabditis elegans] 0.0
blast CAE70335 Hypothetical protein CBG16872 [Caenorhabditis briggsae] 0.0
blast XP_693777 PREDICTED: similar to MGC82388 protein [Danio rerio] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.8E-5
Sequence
Target Sequence 
>C. ELEGANS:174951_AT
gtacccccactttatatcactggtagttatcaaattctttacctttttccaacttttctt
gtttttctgtattatttgggagcaactatgtgctcgaacttttcccattttataggaacg
tctttgaatgctttgtagtagtttttataaacatggtacctttgtaattcccaagttcta
agcctttttttctcacaaaaattcaatttttaacattttaaatttcagtagggaaaatta
attcaaacccattccttttcattatatgctcttccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCCCCACTTTATATCACTGGTA 27 459 33 Antisense
ATCACTGGTAGTTATCAAATTCTTT 226 29 48 Antisense
TTTCTGTATTATTTGGGAGCAACTA 255 671 96 Antisense
GCAACTATGTGCTCGAACTTTTCCC 419 315 114 Antisense
TCCCATTTTATAGGAACGTCTTTGA 198 597 135 Antisense
GGAACGTCTTTGAATGCTTTGTAGT 190 531 147 Antisense
GAATGCTTTGTAGTAGTTTTTATAA 163 331 158 Antisense
ACATGGTACCTTTGTAATTCCCAAG 615 93 183 Antisense
TGTAATTCCCAAGTTCTAAGCCTTT 481 557 195 Antisense
TAATTCAAACCCATTCCTTTTCATT 417 633 271 Antisense
CCTTTTCATTATATGCTCTTCCACT 343 269 286 Antisense
Sequence Source Affymetrix Proprietary Database