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[174950_at]

Description CEK043BZR_rc /REP_DB=TREMBL Accession /GB=D34240 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43b12 : 3prime end, single read.
Cluster 6grp_total > 85      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 60.9
(0.8)
P 		52.5
(-0.1)
A 		25.9
(-3)
A 		80.6
(3)
M 		55
B 45.8
(1)
P 		56.5
(3)
A 		24.4
(-3)
A 		51.2
(2)
A 		32
C 66.9
(-0.1)
P 		20.5
(-2.8)
A 		16.1
(-3)
A 		123
(3)
P 		107
avr 57.9
(0.4) 		43.2
(-1) 		22.1
(-3) 		84.9
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 48.6
(-2.5)
A 		55.7
(-2)
P 		42.6
(-3)
A 		65.7
(-1.3)
P 		65.1
(-1.3)
P 		122.5
(3)
P 		80
B 16.7
(-3)
A 		32.9
(-2)
M 		44.7
(-1.2)
P 		109.3
(2.8)
P 		59.8
(-0.3)
P 		112.5
(3)
P 		96
C 40.3
(-3)
A 		83.1
(2)
A 		51.2
(-1.7)
P 		65.7
(-0)
P 		91.7
(3)
A 		74.7
(1)
P 		51
avr 35.2
(-3) 		57.2
(-1.1) 		46.2
(-2) 		80.2
(1) 		72.2
(0.3) 		103.2
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 22.2
(3)
P 		11.4
(-1.2)
A 		6.8
(-3)
A 		11.8
(-1.1)
M 		15
B 14.6
(3)
P 		14
(2.6)
A 		5.7
(-3)
A 		10.9
(0.5)
A 		9
C 22.1
(3)
P 		5.9
(-2.9)
A 		5.6
(-3)
A 		20.7
(2.5)
P 		17
avr 19.6
(3) 		10.4
(-1.1) 		6
(-3) 		14.5
(0.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9
(-3)
A 		19.8
(0.1)
P 		9.3
(-2.9)
A 		16.7
(-0.8)
P 		19.7
(0.1)
P 		29.8
(3)
P 		21
B 5.8
(-3)
A 		10.9
(-2.2)
M 		10.8
(-2.2)
P 		29
(0.8)
P 		24.3
(0.1)
P 		42
(3)
P 		36
C 14.9
(-2.3)
A 		25.4
(1.5)
A 		13
(-3)
P 		13.2
(-2.9)
P 		29.7
(3)
A 		25
(1.3)
P 		17
avr 9.9
(-3) 		18.7
(-0.6) 		11
(-2.7) 		19.6
(-0.4) 		24.6
(0.9) 		32.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20952
Sequence Type Exemplar sequence
Representative Public ID CEK043BZR NCBI
Target Description CEK043BZR_rc /REP_DB=TREMBL Accession /GB=D34240 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066047 NCBI Caenorhabditis elegans F27B3.5 (F27B3.5) mRNA, complete cds. 11/11 None
F27B3.5 ENSEMBL cdna:known chromosome:CEL140:III:6559034:6562830:-1 gene:F27B3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6559042-6559466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27B3.5
Entrez Gene 3564963 Entrez gene
SwissProt Q9N5V0 EMBL-EBI
WormBase CE28010 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39793 Hypothetical protein F27B3.5 [Caenorhabditis elegans] ref|NP_498448.1| F27B3.5 [Caenorhabditis elegans] 0.0
blast AAF60368 Hypothetical protein C09E7.7 [Caenorhabditis elegans] ref|NP_498446.1| C09E7.7 [Caenorhabditis elegans] 0.0
blast AAN63459 Hypothetical protein C09E7.8b [Caenorhabditis elegans] ref|NP_871695.1| C09E7.8b [Caenorhabditis elegans] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:174950_AT
tagacgaatcactcaaagcccggcatgcttagaacttctcctgtgctcccaggatctatt
aatcaacgcagctcttttattttatatttgtttagcatgtattgcttaatttatttcgtg
gaattaacgttatttgaacaatgctcatttgtttcgctatgggtgtcattcccatttgaa
taactatctagatttgttttatttcttgaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACGAATCACTCAAAGCCCGGCA 17 653 137 Antisense
AAGCCCGGCATGCTTAGAACTTCTC 655 149 152 Antisense
TCTCCTGTGCTCCCAGGATCTATTA 547 609 173 Antisense
AGGATCTATTAATCAACGCAGCTCT 652 55 187 Antisense
AACGCAGCTCTTTTATTTTATATTT 515 145 201 Antisense
GTATTGCTTAATTTATTTCGTGGAA 529 451 235 Antisense
AACGTTATTTGAACAATGCTCATTT 189 145 262 Antisense
AATGCTCATTTGTTTCGCTATGGGT 108 167 276 Antisense
TTTGTTTCGCTATGGGTGTCATTCC 160 667 284 Antisense
GGGTGTCATTCCCATTTGAATAACT 524 497 297 Antisense
TAGATTTGTTTTATTTCTTGAACTT 615 651 325 Antisense
Sequence Source Affymetrix Proprietary Database