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[174949_s_at]

Description CEK068DYR_rc /REP_DB=TREMBL Accession /GB=D65760 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk68d11 : 3prime end, single read.
Cluster 6grp_total > 48      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.5
(-3)
A 		1.7
(-2)
A 		1.9
(-1)
A 		2.7
(3)
A 		1
B 4.9
(3)
A 		3
(-1.1)
A 		3.1
(-0.9)
A 		2.1
(-3)
A 		3
C 1.7
(0.8)
A 		1.9
(2.3)
A 		1.2
(-3)
A 		2
(3)
A 		1
avr 2.7
(3) 		2.2
(-2) 		2.1
(-3) 		2.3
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7.2
(3)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		1.8
(-2.3)
A 		1.3
(-2.8)
A 		2
(-2.1)
A 		6
B 1.3
(-2.5)
A 		1.2
(-2.7)
A 		1
(-3)
A 		2.5
(-0.4)
A 		1.8
(-1.6)
A 		4.5
(3)
A 		4
C 1.4
(-1.5)
A 		1.4
(-1.5)
A 		1.4
(-1.5)
A 		2.9
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2
avr 3.3
(3) 		1.3
(-2.7) 		1.2
(-3) 		2.4
(0.4) 		1.3
(-2.7) 		2.5
(0.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.5
(3)
A 		0.4
(-3)
A 		0.5
(3)
A 		0.4
(-3)
A 		0
B 1.5
(3)
A 		0.8
(-0.8)
A 		0.7
(-1.4)
A 		0.4
(-3)
A 		1
C 0.6
(3)
A 		0.5
(1)
A 		0.4
(-1)
A 		0.3
(-3)
A 		0
avr 0.9
(3) 		0.6
(-0.6) 		0.5
(-1.8) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.3
(3)
A 		0.5
(-1.4)
A 		0.2
(-3)
A 		0.5
(-1.4)
A 		0.4
(-1.9)
A 		0.5
(-1.4)
A 		1
B 0.4
(-2.6)
A 		0.4
(-2.6)
A 		0.3
(-3)
A 		0.7
(-1.3)
A 		0.7
(-1.3)
A 		1.7
(3)
A 		1
C 0.5
(1)
A 		0.4
(-1)
A 		0.4
(-1)
A 		0.6
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
avr 0.7
(1.8) 		0.4
(-1.8) 		0.3
(-3) 		0.6
(0.6) 		0.5
(-0.6) 		0.8
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174949_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20875
Sequence Type Exemplar sequence
Representative Public ID CEK068DYR NCBI
Target Description CEK068DYR_rc /REP_DB=TREMBL Accession /GB=D65760 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk68d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062140 NCBI Caenorhabditis elegans C16C8.17 (C16C8.17) mRNA, complete cds. 11/11 A 
SNAP00000014775 ENSEMBL cdna:SNAP chromosome:CEL140:II:3441707:3446556:1 9/11 None
GENEFINDER00000014792 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3441707:3442440:1 11/11 None
C16C8.17 ENSEMBL cdna:known chromosome:CEL140:II:3440822:3442440:1 gene:C16C8.17 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3442017-3442472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.17
Entrez Gene 173687 Entrez gene
SwissProt P91058 EMBL-EBI
WormBase CE08228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37861 Hypothetical protein C16C8.17 [Caenorhabditis elegans] ref|NP_494541.1| C16C8.17 [Caenorhabditis elegans] 1.0E-161
blast AAB37858 Hypothetical protein C16C8.16 [Caenorhabditis elegans] ref|NP_494544.1| C16C8.16 [Caenorhabditis elegans] 1.0E-115
blast AAB37861 Hypothetical protein C16C8.17 [Caenorhabditis elegans] ref|NP_494541.1| C16C8.17 [Caenorhabditis elegans] 2.0E-92
blast AAB37861 Hypothetical protein C16C8.17 [Caenorhabditis elegans] ref|NP_494541.1| C16C8.17 [Caenorhabditis elegans] 4.0E-83
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 9.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 7.9E-7
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 5.3E-37
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 5.3E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494541.1 2 4-26,131-153
C16C8.17 2 4-26,131-153
Sequence
Target Sequence 
>C. ELEGANS:174949_S_AT
gatggttgttctaagcgacaagccacttgcgaggccaaccccggaaccatgtgctcaaat
tttcaaattcacgcagaaacctcagctggagcaacagtcccagtgggaagctggaatgct
aacggagctgaaagttctttgtcgtgccaagatgatggtacatggctagatcaagaaaat
ccagctctagcggacacagttgtgaacgtggtcaagctggtctgctcgtacgattgcgaa
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTTGTTCTAAGCGACAAGCCA 204 407 62 Antisense
TAAGCGACAAGCCACTTGCGAGGCC 51 637 73 Antisense
CCCCGGAACCATGTGCTCAAATTTT 497 261 100 Antisense
AATTCACGCAGAAACCTCAGCTGGA 151 177 127 Antisense
AAACCTCAGCTGGAGCAACAGTCCC 25 127 138 Antisense
GCAACAGTCCCAGTGGGAAGCTGGA 661 317 152 Antisense
GAAGCTGGAATGCTAACGGAGCTGA 169 343 168 Antisense
GGAGCTGAAAGTTCTTTGTCGTGCC 43 521 185 Antisense
CCAGCTCTAGCGGACACAGTTGTGA 78 273 242 Antisense
TGAACGTGGTCAAGCTGGTCTGCTC 373 573 264 Antisense
TGGTCTGCTCGTACGATTGCGAATG 554 551 279 Antisense
Sequence Source Affymetrix Proprietary Database