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[174948_at]

Description CEK121A6R_rc /REP_DB=TREMBL Accession /GB=D66716 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121a6 : 3prime end, single read.
Cluster 6grp_total > 67      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 8.2
(-2.3)
A 		5.1
(-2.8)
A 		3.6
(-3)
A 		42.1
(3)
A 		39
B 2
(-2.8)
A 		1.4
(-3)
A 		14.3
(1.6)
A 		18.2
(3)
A 		17
C 2.4
(-3)
A 		10
(3)
A 		4.6
(-1.3)
A 		6.6
(0.3)
A 		8
avr 4.2
(-3) 		5.5
(-2.6) 		7.5
(-1.9) 		22.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.2
(3)
A 		2.8
(-2.9)
A 		11.8
(1.8)
A 		2.6
(-3)
A 		6.5
(-1)
A 		2.7
(-2.9)
A 		12
B 3.9
(-2.7)
A 		4.2
(-2.7)
A 		4.4
(-2.7)
A 		9.1
(-2.2)
A 		1.2
(-3)
A 		58.2
(3)
A 		57
C 6
(-2.3)
A 		3.9
(-2.7)
A 		6.3
(-2.3)
A 		6.3
(-2.3)
A 		2
(-3)
A 		38.3
(3)
A 		36
avr 8
(-2) 		3.6
(-2.9) 		7.5
(-2.1) 		6
(-2.4) 		3.2
(-3) 		33.1
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3
(-0.6)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		6.2
(3)
A 		5
B 0.6
(-2.7)
A 		0.4
(-3)
A 		3.3
(2)
A 		3.9
(3)
A 		4
C 0.8
(-3)
A 		2.9
(3)
A 		1.6
(-0.7)
A 		1.1
(-2.1)
A 		2
avr 1.5
(-3) 		1.5
(-3) 		1.9
(-1.9) 		3.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.6
(3)
A 		1
(-2.1)
A 		2.6
(3)
A 		0.7
(-3)
A 		2
(1.1)
A 		0.7
(-3)
A 		2
B 1.3
(-2.8)
A 		1.4
(-2.7)
A 		1.1
(-2.8)
A 		2.4
(-2.5)
A 		0.5
(-3)
A 		21.7
(3)
A 		21
C 2.2
(-2.2)
A 		1.2
(-2.7)
A 		1.6
(-2.5)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		12.8
(3)
A 		12
avr 2
(-2.4) 		1.2
(-2.9) 		1.8
(-2.6) 		1.5
(-2.7) 		1
(-3) 		11.7
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22215
Sequence Type Exemplar sequence
Representative Public ID CEK121A6R NCBI
Target Description CEK121A6R_rc /REP_DB=TREMBL Accession /GB=D66716 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEK121A6R
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEK121A6R CEK121A6R_rc /REP_DB=TREMBL Accession /GB=D66716 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121a6 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040278 11/11 Negative Strand Matching Probes None
SNAP00000040273 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7502224-7502528(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174948_AT
gacaggcagtacttataccaatgacaagaatatatcctacaataaggcttcttttccatg
aagtaccaagttctcgaaggtcgcttggtctagttgcaactcgctttttgatggttgaag
cgcaagcaaaaatacagaaaagtgcagcaattaagggtgctggataaaactcttcagggt
tccatagattctgtaccgtactgggtttgcccatgacaaaactgatagctgatgtaaaag
ttatcaatgggccaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGGCAGTACTTATACCAATGAC 380 369 27 Antisense
CCTACAATAAGGCTTCTTTTCCATG 76 255 62 Antisense
GGCTTCTTTTCCATGAAGTACCAAG 657 537 72 Antisense
AGTACCAAGTTCTCGAAGGTCGCTT 184 1 88 Antisense
AAGGTCGCTTGGTCTAGTTGCAACT 192 159 103 Antisense
GTCTAGTTGCAACTCGCTTTTTGAT 571 469 114 Antisense
GGATAAAACTCTTCAGGGTTCCATA 22 453 188 Antisense
GGGTTCCATAGATTCTGTACCGTAC 317 497 203 Antisense
GTACCGTACTGGGTTTGCCCATGAC 284 457 219 Antisense
TGCCCATGACAAAACTGATAGCTGA 312 585 234 Antisense
GTAAAAGTTATCAATGGGCCAACCA 542 461 260 Antisense
Sequence Source Affymetrix Proprietary Database