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[174947_s_at]

Description CEK058EZR_rc /REP_DB=TREMBL Accession /GB=D65517 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58e12 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.2
(-3)
A 		23.3
(3)
A 		10.1
(-0.9)
A 		3.3
(-3)
A 		20
B 4.8
(-3)
A 		17.3
(3)
A 		5.5
(-2.7)
A 		16.1
(2.4)
A 		13
C 14.4
(3)
A 		3.2
(-3)
A 		12.6
(2)
A 		6.4
(-1.3)
A 		11
avr 7.5
(-3) 		14.6
(3) 		9.4
(-1.4) 		8.6
(-2.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 45
(-0.2)
A 		16
(-2.2)
A 		5.2
(-3)
A 		9.5
(-2.7)
A 		35.8
(-0.8)
A 		90.1
(3)
P 		85
B 3.2
(-3)
A 		3.8
(-3)
A 		8.6
(-2.7)
A 		3.1
(-3)
A 		58.2
(0.3)
A 		102.7
(3)
P 		100
C 16
(-1.8)
A 		34.9
(0.1)
A 		4.3
(-3)
A 		50.3
(1.7)
A 		58.7
(2.5)
M 		63.6
(3)
P 		59
avr 21.4
(-1.8) 		18.2
(-2.1) 		6
(-3) 		21
(-1.9) 		50.9
(0.4) 		85.5
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.2
(-2.1)
A 		5
(3)
A 		2.6
(-0.2)
A 		0.5
(-3)
A 		5
B 1.5
(-2.6)
A 		4.3
(3)
A 		1.3
(-3)
A 		3.4
(1.2)
A 		3
C 4.8
(3)
A 		0.9
(-3)
A 		4.4
(2.4)
A 		1.1
(-2.7)
A 		4
avr 2.5
(-0.2) 		3.4
(3) 		2.8
(0.9) 		1.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.3
(-0.9)
A 		5.7
(-1.7)
A 		1.1
(-3)
A 		2.4
(-2.6)
A 		10.8
(-0.2)
A 		21.9
(3)
P 		21
B 1.1
(-3)
A 		1.3
(-2.9)
A 		2.1
(-2.8)
A 		0.8
(-3)
A 		23.7
(0.7)
A 		38.3
(3)
P 		38
C 5.9
(-1.6)
A 		10.6
(-0.2)
A 		1.1
(-3)
A 		10.1
(-0.3)
A 		19
(2.3)
M 		21.3
(3)
P 		20
avr 5.1
(-2.1) 		5.9
(-2) 		1.4
(-3) 		4.4
(-2.3) 		17.8
(0.8) 		27.2
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20126
Sequence Type Exemplar sequence
Representative Public ID CEK058EZR NCBI
Target Description CEK058EZR_rc /REP_DB=TREMBL Accession /GB=D65517 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk58e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058543 NCBI Caenorhabditis elegans W03F11.3 (W03F11.3) mRNA, complete cds. 11/11 A 
W03F11.3 ENSEMBL cdna:known chromosome:CEL140:I:2233779:2234907:-1 gene:W03F11.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024823 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024825 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2233771-2234226(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03F11.3
Entrez Gene 171779 Entrez gene
SwissProt O01778 EMBL-EBI
WormBase CE28502 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18986 Hypothetical protein W03F11.3 [Caenorhabditis elegans] ref|NP_490944.1| W03F11.3 [Caenorhabditis elegans] 1.0E-102
blast CAE60307 Hypothetical protein CBG03896 [Caenorhabditis briggsae] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:174947_S_AT
cgactcgtcgtgtggaatcctgaagcccggcgagaaaaaagtcatcaaactgtttctgat
gtcgtcggacgattggccactggcatacggagagtacactcagaagcggttgaagttggc
cgtcgagtgtctgagagttcctgatgaaattcagccgactagtgagaaggaatcgcgtac
aattgcccgagctctttggaagcgatcgtacaatgagtggccgttggagcgtctttacac
caaggtgaacatctccctggtttctccaatcaacaacgttcaagctcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACTCGTCGTGTGGAATCCTGAAG 286 251 15 Antisense
GGAATCCTGAAGCCCGGCGAGAAAA 313 531 28 Antisense
AACTGTTTCTGATGTCGTCGGACGA 203 141 62 Antisense
GGACGATTGGCCACTGGCATACGGA 58 517 81 Antisense
TGAAGTTGGCCGTCGAGTGTCTGAG 173 575 125 Antisense
GAGTGTCTGAGAGTTCCTGATGAAA 157 401 139 Antisense
AGGAATCGCGTACAATTGCCCGAGC 664 53 182 Antisense
GAGCTCTTTGGAAGCGATCGTACAA 453 387 203 Antisense
AATGAGTGGCCGTTGGAGCGTCTTT 223 165 226 Antisense
CCTGGTTTCTCCAATCAACAACGTT 153 267 270 Antisense
CCAATCAACAACGTTCAAGCTCCCG 127 277 280 Antisense
Sequence Source Affymetrix Proprietary Database