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[174942_at]

Description CEK110G9R_rc /REP_DB=TREMBL Accession /GB=D72889 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110g9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 33      4grp_high_8_8 > 59      6grp_highest_nonorm > 75      6grp_total > 38      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 759
1 2 3 4 range
A 1066.5
(2.4)
P 		976
(1.6)
P 		1131.3
(3)
P 		467.5
(-3)
P 		664
B 1226.2
(3)
P 		975.2
(0.7)
P 		911.1
(0.1)
P 		565.5
(-3)
P 		661
C 968.7
(1.4)
P 		1027.9
(1.9)
P 		1134.6
(3)
P 		525.7
(-3)
P 		609
avr 1087.1
(3) 		993
(2) 		1059
(2.7) 		519.6
(-3) 		568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 582
1 2 3 4 5 6 range
A 1159
(3)
P 		864.9
(-0)
P 		579.8
(-3)
P 		701.1
(-1.7)
P 		829.7
(-0.4)
P 		1068.2
(2.1)
P 		579
B 1055.3
(3)
P 		907.5
(0.8)
P 		652.7
(-3)
P 		668.3
(-2.8)
P 		746.1
(-1.6)
P 		1012.2
(2.4)
P 		403
C 1161.4
(3)
P 		808.6
(-1.4)
P 		683.6
(-3)
P 		702.2
(-2.8)
P 		819.6
(-1.3)
P 		1003.1
(1)
P 		478
avr 1125.2
(3) 		860.3
(-0.3) 		638.7
(-3) 		690.5
(-2.4) 		798.5
(-1) 		1027.8
(1.8) 		487
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 388.3
(3)
P 		211.9
(-0.3)
P 		295.7
(1.3)
P 		68.4
(-3)
P 		320
B 391
(3)
P 		240.8
(-0.3)
P 		211.1
(-1)
P 		120.5
(-3)
P 		271
C 320.7
(1.5)
P 		295.5
(1)
P 		395.5
(3)
P 		88.6
(-3)
P 		307
avr 366.7
(3) 		249.4
(0.4) 		300.8
(1.6) 		92.5
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 213.7
(-0.1)
P 		307.6
(3)
P 		126.3
(-3)
P 		177.8
(-1.3)
P 		250.4
(1.1)
P 		260.1
(1.4)
P 		181
B 367.2
(2.7)
P 		302.1
(0.9)
P 		158.5
(-3)
P 		177
(-2.5)
P 		303.1
(1)
P 		377.4
(3)
P 		219
C 430.5
(3)
P 		246.7
(-0.8)
P 		174
(-2.3)
P 		141.2
(-3)
P 		265.2
(-0.4)
P 		335.8
(1)
P 		289
avr 337.1
(3) 		285.5
(1.3) 		152.9
(-3) 		165.3
(-2.6) 		272.9
(0.9) 		324.4
(2.6) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21253
Sequence Type Exemplar sequence
Representative Public ID CEK110G9R NCBI
Target Description CEK110G9R_rc /REP_DB=TREMBL Accession /GB=D72889 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk110g9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171075 NCBI Caenorhabditis elegans F42G9.1a (F42G9.1) mRNA, complete cds. 11/11 None
F42G9.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:783709:786069:1 gene:F42G9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038504 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175233 2 1 NM_171075 174942_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:785719-786055(+) 98.82 98.82
Public Domain and Genome References
Ensembl F42G9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91358 Hypothetical protein F42G9.1a [Caenorhabditis elegans] ref|NP_741086.1| F42G9.1a [Caenorhabditis elegans] sp|P49595|PP2C1_CAEEL Probable protein phosphatase 2C F42G9.1 (PP2C) 0.0
blast AAM29692 Hypothetical protein F42G9.1b [Caenorhabditis elegans] ref|NP_741087.1| F42G9.1b [Caenorhabditis elegans] 0.0
blast CAE69173 Hypothetical protein CBG15205 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.3E-15
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.8E-61
Sequence
Target Sequence 
>C. ELEGANS:174942_AT
gaattctatggtttttattacttcaaaagtaccgcctctcccgtttttcaaatttaatat
tgcaaaaaatttggcaaaattttttatcttgtcgaaaaatttagattttctcttaaaaac
acaaaaaaaatcctgaaattcactgctcttatcctgatggccgacatttcccaaccacca
ccacccgttccacatcacttgatcctcatcatcagtcgctactttttattcccattctct
tgttttttttttaaattgtttcttctcgtgtaacttattccttcttcgatgtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTATGGTTTTTATTACTTCA 181 323 28 Antisense
TGGCAAAATTTTTTATCTTGTCGAA 451 545 99 Antisense
AAAATCCTGAAATTCACTGCTCTTA 447 133 154 Antisense
ACATCACTTGATCCTCATCATCAGT 401 83 219 Antisense
TCACTTGATCCTCATCATCAGTCGC 699 627 222 Antisense
CCTCATCATCAGTCGCTACTTTTTA 143 269 231 Antisense
ATCAGTCGCTACTTTTTATTCCCAT 588 29 238 Antisense
TAAATTGTTTCTTCTCGTGTAACTT 61 641 279 Antisense
TCTTCTCGTGTAACTTATTCCTTCT 638 615 288 Antisense
CTCGTGTAACTTATTCCTTCTTCGA 392 227 292 Antisense
TAACTTATTCCTTCTTCGATGTTTG 587 637 298 Antisense
Sequence Source Affymetrix Proprietary Database