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[174941_s_at]

Description CEK043AZR_rc /REP_DB=TREMBL Accession /GB=D34229 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 95      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 76      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 516.4
(3)
P 		366.7
(-1.7)
P 		327.3
(-3)
P 		483.8
(2)
P 		189
B 491.6
(0.8)
P 		367.2
(-3)
P 		402.3
(-1.9)
P 		561.5
(3)
P 		194
C 449.6
(1.5)
P 		388.3
(-0.9)
P 		336.2
(-3)
P 		485.9
(3)
P 		150
avr 485.9
(2.1) 		374.1
(-2.3) 		355.3
(-3) 		510.4
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 416.9
(3)
P 		390.4
(1.4)
P 		315.9
(-3)
P 		384.2
(1.1)
P 		402.1
(2.1)
P 		408.5
(2.5)
P 		101
B 330
(-2.8)
P 		384
(-1)
P 		365.4
(-1.6)
P 		374
(-1.3)
P 		322.5
(-3)
P 		502.7
(3)
P 		180
C 276.7
(-3)
P 		393.9
(0.3)
P 		371.7
(-0.3)
P 		488.6
(3)
P 		415
(0.9)
P 		489.9
(3)
P 		213
avr 341.2
(-3) 		389.4
(-0.7) 		351
(-2.5) 		415.6
(0.5) 		379.9
(-1.2) 		467
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 188
(3)
P 		79.6
(-2.5)
P 		85.6
(-2.2)
P 		70.8
(-3)
P 		117
B 156.8
(3)
P 		90.7
(-3)
P 		93.2
(-2.8)
P 		119.7
(-0.4)
P 		66
C 148.8
(3)
P 		111.6
(-0.3)
P 		117.2
(0.2)
P 		81.9
(-3)
P 		67
avr 164.5
(3) 		94
(-2.7) 		98.7
(-2.4) 		90.8
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 76.9
(-2.3)
P 		138.9
(3)
P 		68.8
(-3)
P 		97.4
(-0.6)
P 		121.3
(1.5)
P 		99.4
(-0.4)
P 		70
B 114.8
(-1.4)
P 		127.8
(-0.6)
P 		88.7
(-3)
P 		99.1
(-2.4)
P 		131
(-0.4)
P 		187.5
(3)
P 		99
C 102.6
(-2.3)
P 		120.2
(-0.8)
P 		94.6
(-3)
P 		98.3
(-2.7)
P 		134.3
(0.4)
P 		164
(3)
P 		69
avr 98.1
(-1.7) 		129
(1.1) 		84
(-3) 		98.3
(-1.7) 		128.9
(1.1) 		150.3
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174941_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20248
Sequence Type Exemplar sequence
Representative Public ID CEK043AZR NCBI
Target Description CEK043AZR_rc /REP_DB=TREMBL Accession /GB=D34229 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk43a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170955 NCBI Caenorhabditis elegans Y105E8A.23 (Y105E8A.23) mRNA, complete cds. 11/11 None
SNAP00000013358 ENSEMBL cdna:SNAP chromosome:CEL140:I:14560306:14588979:-1 11/11 None
GENEFINDER00000013511 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14560361:14573962:-1 11/11 None
Y105E8A.23 ENSEMBL cdna:known chromosome:CEL140:I:14560213:14573962:-1 gene:Y105E8A.23 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14560153-14561019(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.23
Entrez Gene 173317 Entrez gene
SwissProt Q8WQA3 EMBL-EBI
WormBase CE34220 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6350 transcription inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3899 DNA-directed RNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21670 Hypothetical protein Y105E8A.23 [Caenorhabditis elegans] ref|NP_740951.2| Y105E8A.23 [Caenorhabditis elegans] 0.0
blast CAE72599 Hypothetical protein CBG19789 [Caenorhabditis briggsae] 0.0
blast CAD92404 Hypothetical protein Y105E8A.24b [Caenorhabditis elegans] ref|NP_001021684.1| Y105E8A.24b [Caenorhabditis elegans] 0.0
blast CAD21673 Hypothetical protein Y105E8A.24a [Caenorhabditis elegans] ref|NP_001021683.1| Y105E8A.24a [Caenorhabditis elegans] 0.0
blast EAL34064 GA18324-PA [Drosophila pseudoobscura] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 1.7E-24
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 4.5E-31
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 2.0E-80
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 4.5E-31
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 6.1E-77
Pfam IPR002092 EMBL-EBI DNA-directed RNA polymerase, bacteriophage type 1.4E-30
Sequence
Target Sequence 
>C. ELEGANS:174941_S_AT
ttctggcacctgttccgatgaaacaagtcgacgcttttccgccgaattttgtgcattctc
tggattctacacatatgatgctcacctcgttgaattgtgcacagagaggaatcacatttg
ccgcagttcacgattgtttctggacgcacgccaattcggtagatcaaatgaatgaaattt
gccgccaacaattcgtttctctgcattctcagccaatcgttgagcaatgctcggaatggt
tcaaaaagacgtacttgacaccgaaaatggcgaaaattctgccggaaaaggatttccaga
aatattcggaaattttcacggccaacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGCACCTGTTCCGATGAAACA 84 695 18 Antisense
TGAAACAAGTCGACGCTTTTCCGCC 144 573 36 Antisense
ATTTTGTGCATTCTCTGGATTCTAC 5 15 63 Antisense
TCTACACATATGATGCTCACCTCGT 91 615 83 Antisense
GCTCACCTCGTTGAATTGTGCACAG 550 301 97 Antisense
GGAATCACATTTGCCGCAGTTCACG 494 531 125 Antisense
AGTTCACGATTGTTTCTGGACGCAC 462 63 142 Antisense
GACGCACGCCAATTCGGTAGATCAA 536 379 160 Antisense
GAAATTTGCCGCCAACAATTCGTTT 559 363 191 Antisense
AGACGTACTTGACACCGAAAATGGC 5 21 264 Antisense
TTCGGAAATTTTCACGGCCAACATT 49 643 322 Antisense
Sequence Source Affymetrix Proprietary Database