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[174940_at]

Description CEK039GYR_rc /REP_DB=TREMBL Accession /GB=D34019 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      6grp_highest_nonorm > 42      6grp_total > 20      4grp_total > 60      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 938
1 2 3 4 range
A 702.6
(2.1)
P 		822.3
(3)
P 		714.3
(2.2)
P 		20.4
(-3)
A 		802
B 682
(1.2)
P 		761.4
(1.7)
P 		958.6
(3)
P 		32
(-3)
A 		927
C 697
(1.9)
P 		738.4
(2.2)
P 		836.3
(3)
P 		58.9
(-3)
A 		777
avr 693.9
(1.9) 		774
(2.5) 		836.4
(3) 		37.1
(-3) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1042
1 2 3 4 5 6 range
A 534.8
(-2.2)
P 		1424
(3)
P 		1263.2
(2.1)
P 		799.9
(-0.7)
P 		673.7
(-1.4)
P 		399.1
(-3)
P 		1025
B 447.2
(-3)
P 		1240.8
(2.7)
P 		1286.9
(3)
P 		1053.3
(1.3)
P 		659.2
(-1.5)
P 		462.1
(-2.9)
P 		840
C 602.9
(-1.4)
P 		1189.5
(2.9)
P 		1196.6
(3)
P 		1111.9
(2.4)
P 		802.1
(0.1)
P 		382
(-3)
P 		815
avr 528.3
(-2.2) 		1284.8
(3) 		1248.9
(2.8) 		988.4
(1) 		711.7
(-1) 		414.4
(-3) 		870
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 255.8
(3)
P 		178.5
(1.2)
P 		186.7
(1.4)
P 		3
(-3)
A 		253
B 217.5
(2.9)
P 		188
(2)
P 		222.1
(3)
P 		6.8
(-3)
A 		215
C 230.7
(1.7)
P 		212.3
(1.3)
P 		291.5
(3)
P 		9.9
(-3)
A 		282
avr 234.7
(3) 		192.9
(1.9) 		233.4
(3) 		6.6
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 98.6
(-3)
P 		506.4
(3)
P 		275.1
(-0.4)
P 		202.9
(-1.5)
P 		203.3
(-1.4)
P 		97.2
(-3)
P 		409
B 155.6
(-3)
P 		413
(3)
P 		312.5
(0.7)
P 		279
(-0.1)
P 		267.8
(-0.4)
P 		172.3
(-2.6)
P 		257
C 223.5
(-0.6)
P 		363
(3)
P 		304.6
(1.5)
P 		223.6
(-0.6)
P 		259.5
(0.4)
P 		127.9
(-3)
P 		235
avr 159.2
(-2.5) 		427.5
(3) 		297.4
(0.4) 		235.2
(-0.9) 		243.5
(-0.7) 		132.5
(-3) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20771
Sequence Type Exemplar sequence
Representative Public ID CEK039GYR NCBI
Target Description CEK039GYR_rc /REP_DB=TREMBL Accession /GB=D34019 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk39g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063110 NCBI Caenorhabditis elegans F32A5.2a (Peroxidase) mRNA, complete cds. 11/11 A 
F32A5.2a ENSEMBL cdna:known chromosome:CEL140:II:7245846:7250105:1 gene:F32A5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063111 6/11 Cross Hyb Matching Probes A 
SNAP00000015813 6/11 Cross Hyb Matching Probes None
GENEFINDER00000015826 6/11 Cross Hyb Matching Probes None
F32A5.2b 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174191 2 1 NM_063110 174940_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7249653-7250084(+) 99.73 99.73
Public Domain and Genome References
Ensembl F32A5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68356 Hypothetical protein F32A5.2a [Caenorhabditis elegans] ref|NP_495511.1| F32A5.2a [Caenorhabditis elegans] 0.0
blast T16232 hypothetical protein F32A5.2 - Caenorhabditis elegans 0.0
blast AAK68357 Hypothetical protein F32A5.2b [Caenorhabditis elegans] ref|NP_495512.1| F32A5.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.1E-12
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174940_AT
atatcaacaattccacgagaagcattccgagtgggccatatggttccatgtagtcagatt
ccgtcgatggacctcaatcagtggcgagacttttaaacgacaaaaaatgacagcacattt
atacttttaattcaatatgtttgttctatttttcacattccttttgtcacaaatgcgggg
tatgggcagaaaagctcacttcaaattctctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAACAATTCCACGAGAAGCAT 30 21 114 Antisense
CGAGAAGCATTCCGAGTGGGCCATA 518 249 129 Antisense
CGAGTGGGCCATATGGTTCCATGTA 316 249 141 Antisense
GTTCCATGTAGTCAGATTCCGTCGA 362 439 156 Antisense
ATTCCGTCGATGGACCTCAATCAGT 290 7 171 Antisense
GGACCTCAATCAGTGGCGAGACTTT 70 523 182 Antisense
ATGACAGCACATTTATACTTTTAAT 312 45 220 Antisense
TTGTTCTATTTTTCACATTCCTTTT 52 707 254 Antisense
TTTTCACATTCCTTTTGTCACAAAT 203 677 263 Antisense
GCGGGGTATGGGCAGAAAAGCTCAC 249 1 288 Antisense
AAAAGCTCACTTCAAATTCTCTCTC 36 133 303 Antisense
Sequence Source Affymetrix Proprietary Database