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[174939_s_at]

Description CEK032GYR_rc /REP_DB=TREMBL Accession /GB=D33561 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 86      6grp_total > 36      4grp_total > 59      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 887
1 2 3 4 range
A 1108.3
(0.4)
P 		1490.3
(3)
P 		1269
(1.5)
P 		603.1
(-3)
P 		887
B 1241.5
(1.4)
P 		1376.1
(2.5)
P 		1431
(3)
P 		710.1
(-3)
P 		721
C 1194.1
(1.7)
P 		1194.7
(1.7)
P 		1318.1
(3)
P 		735.2
(-3)
P 		583
avr 1181.3
(1.5) 		1353.7
(3) 		1339.4
(2.9) 		682.8
(-3) 		671

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 962
1 2 3 4 5 6 range
A 1519.7
(3)
P 		1196.9
(1)
P 		659.2
(-2.4)
P 		558.2
(-3)
P 		901.3
(-0.9)
P 		1172.9
(0.8)
P 		962
B 1158
(2.2)
P 		1197.3
(2.7)
P 		1214.6
(3)
P 		930.3
(-1.2)
P 		809.9
(-3)
P 		1148.3
(2)
P 		405
C 1139
(2.6)
P 		1181.8
(3)
P 		877.9
(0)
P 		567.6
(-3)
P 		821.3
(-0.5)
P 		1129.8
(2.5)
P 		614
avr 1272.2
(3) 		1192
(2.2) 		917.2
(-0.6) 		685.4
(-3) 		844.2
(-1.4) 		1150.3
(1.8) 		587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 403.5
(3)
P 		323.5
(1.5)
P 		331.7
(1.6)
P 		88.3
(-3)
P 		315
B 395.9
(3)
P 		339.9
(1.6)
P 		331.6
(1.4)
P 		151.3
(-3)
P 		245
C 395.3
(1.9)
P 		343.5
(0.9)
P 		459.4
(3)
P 		124
(-3)
P 		335
avr 398.2
(3) 		335.6
(1.6) 		374.2
(2.5) 		121.2
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 280.1
(-0.1)
P 		425.7
(3)
P 		143.6
(-3)
P 		141.6
(-3)
P 		272
(-0.2)
P 		285.6
(0)
P 		284
B 402.9
(2.2)
P 		398.5
(2)
P 		294.9
(-1.4)
P 		246.4
(-3)
P 		329
(-0.3)
P 		428.2
(3)
P 		182
C 422.2
(3)
P 		360.6
(1.8)
P 		223.4
(-0.9)
P 		114.2
(-3)
P 		265.8
(-0)
P 		378.2
(2.1)
P 		308
avr 368.4
(2.3) 		394.9
(3) 		220.6
(-1.6) 		167.4
(-3) 		288.9
(0.2) 		364
(2.2) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174939_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21495
Sequence Type Exemplar sequence
Representative Public ID CEK032GYR NCBI
Target Description CEK032GYR_rc /REP_DB=TREMBL Accession /GB=D33561 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk32g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028263 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-3) (lst-3) mRNA, complete cds. 11/11 None
SNAP00000035579 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14073904:14082993:1 11/11 None
GENEFINDER00000035590 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14072132:14076574:1 11/11 None
Y37A1B.1a ENSEMBL cdna:known chromosome:CEL140:IV:14071517:14076712:1 gene:Y37A1B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178362 2 1 NM_001028263 174939_s_at (11), 180736_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14076217-14076705(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y37A1B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05201 Hypothetical protein Y37A1B.1a [Caenorhabditis elegans] emb|CAA19496.1| Hypothetical protein Y37A1B.1a [Caenorhabditis elegans] ref|NP_001023434.1| Lateral Signaling Target family member (lst-3) [Caenorhabditis elegans] 0.0
blast CAE71770 Hypothetical protein CBG18765 [Caenorhabditis briggsae] 0.0
blast CAD89738 Hypothetical protein Y37A1B.1b [Caenorhabditis elegans] emb|CAD89760.1| Hypothetical protein Y37A1B.1b [Caenorhabditis elegans] ref|NP_001023435.1| Lateral Signaling Target family member (lst-3) [Caenorhabditis elegans] 0.0
blast CAB05197 Hypothetical protein F52B11.1a [Caenorhabditis elegans] ref|NP_001023214.1| F52B11.1a [Caenorhabditis elegans] 0.0
blast CAD89737 Hypothetical protein F52B11.1b [Caenorhabditis elegans] ref|NP_001023215.1| F52B11.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.2E-13
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.2E-13
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.2E-13
Sequence
Target Sequence 
>C. ELEGANS:174939_S_AT
aattctgctctgaaacaggcccttcaagactgcaaacgacatgctgatcgcattttttct
gtagttgagaaggttatgccaccaccaccaaagaaggaggagaagagcaaggagaaaacc
gataagaaggatgacaaagtatccgagaaatccgctgaaaaatcaactgaagaaccttct
caagaagttccagcgagtgctgagcaggctgctgagccatctacagaagcagaaccaatt
gttattgatgagtctgaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTGCTCTGAAACAGGCCCTTC 528 177 15 Antisense
AACAGGCCCTTCAAGACTGCAAACG 484 137 28 Antisense
GACTGCAAACGACATGCTGATCGCA 127 375 42 Antisense
GCTGATCGCATTTTTTCTGTAGTTG 73 297 57 Antisense
GTAGTTGAGAAGGTTATGCCACCAC 140 457 75 Antisense
AAAGTATCCGAGAAATCCGCTGAAA 210 123 150 Antisense
AGAACCTTCTCAAGAAGTTCCAGCG 286 73 185 Antisense
AGTTCCAGCGAGTGCTGAGCAGGCT 211 65 200 Antisense
TGAGCAGGCTGCTGAGCCATCTACA 465 569 215 Antisense
GAGCCATCTACAGAAGCAGAACCAA 452 385 228 Antisense
AATTGTTATTGATGAGTCTGAGGAT 607 177 251 Antisense
Sequence Source Affymetrix Proprietary Database