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[174938_at]

Description CEK124G4R_rc /REP_DB=TREMBL Accession /GB=D66861 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 84      6grp_total > 39      4grp_total > 37      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 667.4
(3)
P 		342.1
(-3)
P 		485.1
(-0.4)
P 		365.6
(-2.6)
P 		325
B 488
(-1.3)
P 		635.7
(1.4)
P 		392
(-3)
P 		724.8
(3)
P 		333
C 630.9
(3)
P 		604.5
(1.8)
P 		494.3
(-3)
P 		506.9
(-2.4)
P 		137
avr 595.4
(3) 		527.4
(0) 		457.1
(-3) 		532.4
(0.3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 514.3
(-0.7)
P 		556.8
(-0)
P 		448.9
(-1.8)
P 		374.4
(-3)
P 		739.2
(3)
P 		691.9
(2.2)
P 		365
B 926.7
(3)
P 		636.4
(-1.5)
P 		536.9
(-3)
P 		626.9
(-1.6)
P 		661.9
(-1.1)
P 		756.9
(0.4)
P 		390
C 1082.1
(3)
P 		553
(-1.5)
P 		533.7
(-1.6)
P 		369.8
(-3)
P 		773.4
(0.4)
P 		669.7
(-0.5)
P 		712
avr 841
(3) 		582.1
(-1) 		506.5
(-2.2) 		457
(-3) 		724.8
(1.2) 		706.2
(0.9) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 243
(3)
P 		74.3
(-2.3)
P 		126.8
(-0.7)
P 		53.5
(-3)
P 		190
B 155.6
(2.9)
P 		157
(3)
P 		90.8
(-3)
P 		154.5
(2.8)
P 		66
C 208.9
(3)
P 		173.8
(1.3)
P 		172.3
(1.2)
P 		85.5
(-3)
P 		123
avr 202.5
(3) 		135
(-0.9) 		130
(-1.2) 		97.8
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 327
1 2 3 4 5 6 range
A 94.8
(-3)
P 		198
(1.8)
P 		97.8
(-2.9)
P 		95
(-3)
P 		223.1
(3)
P 		168.5
(0.4)
P 		128
B 322.4
(3)
P 		211.8
(-0.5)
P 		130.4
(-3)
P 		166
(-1.9)
P 		268.9
(1.3)
P 		282.2
(1.7)
P 		192
C 401.1
(3)
P 		168.7
(-1.3)
P 		135.8
(-1.9)
P 		74.4
(-3)
P 		250.2
(0.2)
P 		224.2
(-0.2)
P 		327
avr 272.8
(3) 		192.8
(0) 		121.3
(-2.6) 		111.8
(-3) 		247.4
(2.1) 		225
(1.2) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21249
Sequence Type Exemplar sequence
Representative Public ID CEK124G4R NCBI
Target Description CEK124G4R_rc /REP_DB=TREMBL Accession /GB=D66861 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk124g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027743 NCBI Caenorhabditis elegans Y55B1AR.2a (Y55B1AR.2) mRNA, complete cds. 11/11 None
Y55B1AR.2a ENSEMBL cdna:known chromosome:CEL140:III:587190:598102:-1 gene:Y55B1AR.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175211 2 1 NM_001027743 174938_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:587199-587515(-) 94.94 100.0
Public Domain and Genome References
Ensembl Y55B1AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68901 Hypothetical protein Y55B1AR.2a [Caenorhabditis elegans] ref|NP_001022914.1| Y55B1AR.2a [Caenorhabditis elegans] 0.0
blast AAP86610 Hypothetical protein Y55B1AR.2b [Caenorhabditis elegans] ref|NP_001022915.1| Y55B1AR.2b [Caenorhabditis elegans] 1.0E-114
blast CAE69219 Hypothetical protein CBG15259 [Caenorhabditis briggsae] 1.0E-48
Sequence
Target Sequence 
>C. ELEGANS:174938_AT
attatttctgacgaattataccctaaatgtcaattaaaaaccggttccaacatgactttt
cgtgcaattttatctctaaaaatgcacaattttatcccaactttctacttagccggttac
gagttttttatccaaaaagccaagtttattctcccataattcgcatatttttgtgttttt
caaaaaatttcgaatttttttttgaattttttttcgaattgtcttgtatatatatatatt
ctatgagtttctttgtgcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTTCTGACGAATTATACCCTA 618 13 16 Antisense
GAATTATACCCTAAATGTCAATTAA 95 323 28 Antisense
TCAATTAAAAACCGGTTCCAACATG 700 221 45 Antisense
GGTTCCAACATGACTTTTCGTGCAA 479 507 58 Antisense
GACTTTTCGTGCAATTTTATCTCTA 144 373 69 Antisense
ATGCACAATTTTATCCCAACTTTCT 418 43 97 Antisense
CACAATTTTATCCCAACTTTCTACT 608 193 100 Antisense
CAAAAAGCCAAGTTTATTCTCCCAT 545 191 148 Antisense
AAGCCAAGTTTATTCTCCCATAATT 681 147 152 Antisense
ATTCTCCCATAATTCGCATATTTTT 556 9 163 Antisense
TATTCTATGAGTTTCTTTGTGCCCC 463 663 252 Antisense
Sequence Source Affymetrix Proprietary Database