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[174937_at]

Description CEK114H7R_rc /REP_DB=TREMBL Accession /GB=D73161 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk114h7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 91      6grp_total > 69      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 144.9
(1.4)
P 		84.3
(-3)
P 		167.3
(3)
P 		101.4
(-1.8)
P 		83
B 147.1
(2.4)
P 		120.7
(-0.2)
P 		91.7
(-3)
P 		152.9
(3)
P 		61
C 138.4
(2.8)
P 		139.1
(3)
P 		130.1
(1)
P 		112.1
(-3)
P 		27
avr 143.5
(3) 		114.7
(-3) 		129.7
(0.1) 		122.1
(-1.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 168.1
(-0.1)
P 		114
(-1.9)
P 		80.8
(-3)
P 		139.2
(-1.1)
P 		189.9
(0.6)
P 		263.8
(3)
P 		183
B 111.2
(-1.7)
P 		113.8
(-1.6)
P 		85
(-3)
P 		142.7
(-0.2)
P 		183.1
(1.8)
P 		206.9
(3)
P 		122
C 227.8
(1)
P 		126.5
(-2.3)
P 		118
(-2.6)
P 		104.4
(-3)
P 		201.5
(0.2)
P 		289.3
(3)
P 		185
avr 169
(-0.2) 		118.1
(-2.1) 		94.6
(-3) 		128.8
(-1.7) 		191.5
(0.7) 		253.3
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 52.7
(3)
P 		18.3
(-2.4)
P 		43.7
(1.6)
P 		14.8
(-3)
P 		38
B 46.9
(3)
P 		29.8
(-1)
P 		21.3
(-3)
P 		32.6
(-0.4)
P 		26
C 45.8
(3)
P 		40
(1.7)
P 		45.3
(2.9)
P 		18.9
(-3)
P 		27
avr 48.5
(3) 		29.4
(-1.3) 		36.8
(0.3) 		22.1
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 31
(-1.3)
P 		40.5
(-0.1)
P 		17.6
(-3)
P 		35.3
(-0.7)
P 		57.3
(2.1)
P 		64.2
(3)
P 		47
B 38.7
(-1.1)
P 		37.9
(-1.2)
P 		20.6
(-3)
P 		37.8
(-1.2)
P 		74.4
(2.7)
P 		77.1
(3)
P 		57
C 84.4
(2)
P 		38.6
(-1.6)
P 		30
(-2.3)
P 		21
(-3)
P 		65.2
(0.5)
P 		96.8
(3)
P 		76
avr 51.4
(0) 		39
(-1.3) 		22.7
(-3) 		31.4
(-2.1) 		65.6
(1.5) 		79.4
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20119
Sequence Type Exemplar sequence
Representative Public ID CEK114H7R NCBI
Target Description CEK114H7R_rc /REP_DB=TREMBL Accession /GB=D73161 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk114h7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T20F5.7 ENSEMBL cdna:known chromosome:CEL140:I:3925463:3927889:-1 gene:T20F5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034154 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3925472-3925809(-) 100.0 100.0
Public Domain and Genome References
Ensembl T20F5.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37669 Hypothetical protein T20F5.7 [Caenorhabditis elegans] ref|NP_491267.1| T20F5.7 [Caenorhabditis elegans] 1.0E-154
blast CAE66702 Hypothetical protein CBG12047 [Caenorhabditis briggsae] 5.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.5E-5
Sequence
Target Sequence 
>C. ELEGANS:174937_AT
ttcgggcttttcataattctcatccgctattagttctcaaaattagaagttttaacctca
tacaaaatgatctgcatgaaaatatttcacattttatattaagtttcttttctcctccac
acattcttggtctctcccacctcctccccgtcccccctcagctctttcttttatcctgat
taatttgaatgtttttttgattccacgtgttctcttccgtatcatttttctatttttatt
tattactgttccattcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGGCTTTTCATAATTCTCATCC 331 693 20 Antisense
CTTTTCATAATTCTCATCCGCTATT 123 223 26 Antisense
ATTCTCATCCGCTATTAGTTCTCAA 416 11 35 Antisense
CATCCGCTATTAGTTCTCAAAATTA 328 211 40 Antisense
TAGAAGTTTTAACCTCATACAAAAT 527 649 63 Antisense
AACCTCATACAAAATGATCTGCATG 645 147 73 Antisense
TATATTAAGTTTCTTTTCTCCTCCA 493 661 114 Antisense
CCTCAGCTCTTTCTTTTATCCTGAT 559 267 175 Antisense
AGCTCTTTCTTTTATCCTGATTAAT 515 79 179 Antisense
ATGTTTTTTTGATTCCACGTGTTCT 334 47 208 Antisense
TTATTTATTACTGTTCCATTCCCCA 424 679 255 Antisense
Sequence Source Affymetrix Proprietary Database