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[174936_s_at]

Description CEK055FXR_rc /REP_DB=TREMBL Accession /GB=D65380 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk55f10 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 12.4
(-1.8)
A 		13.4
(-0.4)
A 		15.9
(3)
A 		11.5
(-3)
A 		4
B 9.9
(-1.1)
A 		13.2
(3)
A 		8.4
(-3)
A 		8.5
(-2.9)
A 		5
C 12.5
(-2.3)
A 		15.4
(3)
A 		12.1
(-3)
A 		12.9
(-1.5)
A 		3
avr 11.6
(-1.8) 		14
(3) 		12.1
(-0.8) 		11
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 6.9
(-2.9)
A 		10.9
(-2.8)
A 		4.8
(-3)
A 		11.9
(-2.7)
A 		36.7
(-1.7)
A 		152.2
(3)
A 		147
B 10.6
(-3)
A 		15
(-2.6)
A 		21.2
(-2.1)
A 		10.4
(-3)
A 		78.4
(2.8)
A 		81
(3)
P 		71
C 9.2
(-2.9)
A 		7.6
(-3)
A 		11.4
(-2.8)
A 		16.1
(-2.6)
A 		76.3
(0)
A 		144.8
(3)
A 		137
avr 8.9
(-3) 		11.2
(-2.9) 		12.5
(-2.8) 		12.8
(-2.8) 		63.8
(-0.2) 		126
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.5
(3)
A 		2.9
(-0.4)
A 		4.2
(2.4)
A 		1.7
(-3)
A 		3
B 3.2
(2.6)
A 		3.3
(3)
A 		2
(-2.2)
A 		1.8
(-3)
A 		2
C 4.1
(2.2)
A 		4.4
(3)
A 		4.2
(2.5)
A 		2.2
(-3)
A 		2
avr 3.9
(3) 		3.5
(1.8) 		3.5
(1.8) 		1.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.9
(-2.5)
A 		1
(-3)
A 		3
(-2.7)
A 		11.1
(-1.3)
A 		37.1
(3)
A 		36
B 3.7
(-2.8)
A 		5
(-2.5)
A 		5.1
(-2.5)
A 		2.8
(-3)
A 		31.8
(3)
A 		30.2
(2.7)
P 		29
C 3.4
(-2.9)
A 		2.3
(-3)
A 		2.9
(-2.9)
A 		3.2
(-2.9)
A 		24.7
(-0.1)
A 		48.5
(3)
A 		46
avr 2.8
(-3) 		3.7
(-2.8) 		3
(-3) 		3
(-3) 		22.5
(0.3) 		38.6
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174936_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20391
Sequence Type Exemplar sequence
Representative Public ID CEK055FXR NCBI
Target Description CEK055FXR_rc /REP_DB=TREMBL Accession /GB=D65380 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk55f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060555 NCBI Caenorhabditis elegans C17D12.5 (C17D12.5) mRNA, complete cds. 11/11 None
GENEFINDER00000011121 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11594373:11595416:1 10/11 None
SNAP00000011111 ENSEMBL cdna:SNAP chromosome:CEL140:I:11594785:11595416:1 11/11 None
C17D12.5 ENSEMBL cdna:known chromosome:CEL140:I:11594358:11595416:1 gene:C17D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11594773-11595361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17D12.5
Entrez Gene 173043 Entrez gene
SwissProt O62069 EMBL-EBI
WormBase CE30492 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4840 ubiquitin conjugating enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03893 Hypothetical protein C17D12.5 [Caenorhabditis elegans] ref|NP_492956.2| C17D12.5 [Caenorhabditis elegans] 1.0E-76
blast CAB03893 Hypothetical protein C17D12.5 [Caenorhabditis elegans] ref|NP_492956.2| C17D12.5 [Caenorhabditis elegans] 1.0E-73
blast CAB03893 Hypothetical protein C17D12.5 [Caenorhabditis elegans] ref|NP_492956.2| C17D12.5 [Caenorhabditis elegans] 8.0E-65
blast CAE69302 Hypothetical protein CBG15357 [Caenorhabditis briggsae] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:174936_S_AT
cgccctacaccgagtacatcgtaaccgtcgcaattccgccgaaattcccgttctcgccgc
cggcgatcacttgcaaaactgataaaaatatgaaattcctgtttttggaggaaaatcaat
ggaaaccgtctaccggaattgttgcagtccttatcgaagcctgcagtgtgatttcgcgtc
gagacctggtcccccgtgcaccggttcttccacgcatccgtccaccacaagcacgtacgc
caactagtgcttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCTACACCGAGTACATCGTAAC 552 235 23 Antisense
AGTACATCGTAACCGTCGCAATTCC 162 63 35 Antisense
AATATGAAATTCCTGTTTTTGGAGG 419 171 109 Antisense
ATCAATGGAAACCGTCTACCGGAAT 351 25 137 Antisense
ACCGTCTACCGGAATTGTTGCAGTC 363 89 147 Antisense
ATTGTTGCAGTCCTTATCGAAGCCT 158 5 160 Antisense
GTCCTTATCGAAGCCTGCAGTGTGA 205 477 169 Antisense
CCTGCAGTGTGATTTCGCGTCGAGA 671 265 182 Antisense
CAGTGTGATTTCGCGTCGAGACCTG 535 207 186 Antisense
CCACAAGCACGTACGCCAACTAGTG 674 275 247 Antisense
GCACGTACGCCAACTAGTGCTTCGC 389 315 253 Antisense
Sequence Source Affymetrix Proprietary Database