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[174935_at]

Description CEK119E6R_rc /REP_DB=TREMBL Accession /GB=D66618 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 185.8
(-2.5)
P 		165.1
(-3)
P 		199
(-2.2)
P 		420.2
(3)
P 		255
B 267.3
(-1)
P 		149.3
(-3)
P 		155.4
(-2.9)
P 		511.2
(3)
P 		362
C 214.6
(-2.4)
P 		200.8
(-3)
P 		201.5
(-3)
P 		348.3
(3)
P 		148
avr 222.6
(-1.8) 		171.7
(-3) 		185.3
(-2.7) 		426.6
(3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 239.7
(-2.1)
P 		191.9
(-3)
P 		259.6
(-1.8)
P 		261.5
(-1.8)
P 		295
(-1.2)
P 		529.1
(3)
P 		337
B 237.5
(-2.2)
P 		192.5
(-3)
P 		208.8
(-2.7)
P 		206.9
(-2.7)
P 		312.7
(-0.8)
P 		520.8
(3)
P 		328
C 210.8
(-2.6)
P 		288.3
(-1.4)
P 		284.2
(-1.4)
P 		184.1
(-3)
P 		278.7
(-1.5)
P 		564.5
(3)
P 		380
avr 229.3
(-2.8) 		224.2
(-2.9) 		250.9
(-2.4) 		217.5
(-3) 		295.5
(-1.5) 		538.1
(3) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 67.6
(3)
P 		35.8
(-3)
P 		52
(0.1)
P 		61.5
(1.8)
P 		32
B 85.2
(1)
P 		36.9
(-2.9)
P 		36
(-3)
P 		108.9
(3)
P 		73
C 71
(3)
P 		57.7
(-3)
P 		70.2
(2.6)
P 		58.7
(-2.5)
P 		13
avr 74.6
(2.7) 		43.5
(-3) 		52.7
(-1.3) 		76.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 44.2
(-3)
P 		68.2
(-1.3)
P 		56.5
(-2.1)
P 		66.3
(-1.4)
P 		89
(0.2)
P 		128.8
(3)
P 		85
B 82.6
(-1.7)
P 		64.1
(-2.4)
P 		50.7
(-3)
P 		54.8
(-2.8)
P 		127
(0.2)
P 		194.2
(3)
P 		144
C 78.1
(-1.4)
P 		88
(-1)
P 		72.3
(-1.6)
P 		37
(-3)
P 		90.2
(-0.9)
P 		189
(3)
P 		152
avr 68.3
(-2.2) 		73.4
(-1.9) 		59.8
(-2.6) 		52.7
(-3) 		102.1
(-0.5) 		170.7
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20282
Sequence Type Exemplar sequence
Representative Public ID CEK119E6R NCBI
Target Description CEK119E6R_rc /REP_DB=TREMBL Accession /GB=D66618 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C25A1.12 ENSEMBL cdna:known chromosome:CEL140:I:10199445:10201280:-1 gene:C25A1.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000660 6/11 Cross Hyb Matching Probes None
GENEFINDER00000000666 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10199385-10199709(-) 100.0 100.0
Public Domain and Genome References
Ensembl C25A1.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02763 Hypothetical protein C25A1.12 [Caenorhabditis elegans] ref|NP_492685.1| C25A1.12 [Caenorhabditis elegans] 1.0E-178
blast CAE66849 Hypothetical protein CBG12221 [Caenorhabditis briggsae] 2.0E-96
blast NP_071343 abhydrolase domain containing 4 [Homo sapiens] gb|AAH24779.1| Abhydrolase domain containing 4 [Homo sapiens] sp|Q8TB40|ABHD4_HUMAN Abhydrolase domain containing protein 4.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR000073 EMBL-EBI Alpha/beta hydrolase fold 2.8E-17
Sequence
Target Sequence 
>C. ELEGANS:174935_AT
gaggtgctggaactcatgtctatgcagatgatccggcagctttcaatgaaattgtatcgg
atgttgtagaaggacggctttcgaatccttcaaatgatttcgagattgaggagtgttgtc
attcggattaagcagcatcaatcttctttaatgtattgtatataagctaacttttttttt
agaaacttcatagttttctctaatcttgtctagttcgagacaaaattaagtgccttttat
ttgtatctttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTGCTGGAACTCATGTCTATGC 207 403 41 Antisense
ATGTCTATGCAGATGATCCGGCAGC 262 49 56 Antisense
GATGATCCGGCAGCTTTCAATGAAA 429 411 67 Antisense
TCGGATGTTGTAGAAGGACGGCTTT 515 541 97 Antisense
AGGACGGCTTTCGAATCCTTCAAAT 513 53 111 Antisense
GATTTCGAGATTGAGGAGTGTTGTC 587 425 136 Antisense
GGAGTGTTGTCATTCGGATTAAGCA 530 513 150 Antisense
TCGGATTAAGCAGCATCAATCTTCT 48 607 163 Antisense
GAAACTTCATAGTTTTCTCTAATCT 314 357 222 Antisense
TTTCTCTAATCTTGTCTAGTTCGAG 342 669 235 Antisense
AGTGCCTTTTATTTGTATCTTTCAT 233 61 269 Antisense
Sequence Source Affymetrix Proprietary Database