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[174934_at]

Description CEK129H4R_rc /REP_DB=TREMBL Accession /GB=D65029 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk129h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 01      6grp_total > 27      4grp_total > 17      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1683
1 2 3 4 range
A 2334.5
(-3)
P 		2942.5
(-0.3)
P 		2742.6
(-1.2)
P 		3697
(3)
P 		1363
B 2564.5
(-3)
P 		2731.1
(-2)
P 		2640.6
(-2.5)
P 		3535.6
(3)
P 		971
C 2013.6
(-3)
P 		2503.8
(-0.8)
P 		2501.3
(-0.8)
P 		3367.4
(3)
P 		1354
avr 2304.2
(-3) 		2725.8
(-0.9) 		2628.2
(-1.4) 		3533.3
(3) 		1229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2054
1 2 3 4 5 6 range
A 3398.6
(3)
P 		2598.5
(0.7)
P 		1344.7
(-3)
P 		1444.4
(-2.7)
P 		1904.5
(-1.4)
P 		2336.2
(-0.1)
P 		2054
B 2892.2
(3)
P 		2349.9
(0.8)
P 		1505
(-2.6)
P 		1877.3
(-1.1)
P 		1406.9
(-3)
P 		1690.6
(-1.9)
P 		1485
C 2794.3
(3)
P 		2066.8
(-1)
P 		1973.3
(-1.6)
P 		1841
(-2.3)
P 		1712.5
(-3)
P 		1780
(-2.6)
P 		1082
avr 3028.4
(3) 		2338.4
(0.1) 		1607.7
(-3) 		1720.9
(-2.5) 		1674.6
(-2.7) 		1935.6
(-1.6) 		1421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 850
(3)
P 		638.7
(-1.1)
P 		717
(0.4)
P 		541.2
(-3)
P 		309
B 817.8
(3)
P 		674.5
(-1.2)
P 		611.9
(-3)
P 		753.4
(1.1)
P 		206
C 666.6
(-1.1)
P 		719.8
(0)
P 		871.8
(3)
P 		567.8
(-3)
P 		304
avr 778.1
(3) 		677.7
(-0.8) 		733.6
(1.3) 		620.8
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 743
1 2 3 4 5 6 range
A 626.5
(0.2)
P 		924.2
(3)
P 		292.9
(-3)
P 		366.3
(-2.3)
P 		574.7
(-0.3)
P 		568.8
(-0.4)
P 		631
B 1006.3
(3)
P 		782.2
(0.9)
P 		365.5
(-3)
P 		497.2
(-1.8)
P 		571.6
(-1.1)
P 		630.4
(-0.5)
P 		641
C 1035.7
(3)
P 		630.6
(-0.7)
P 		502.2
(-1.8)
P 		370.2
(-3)
P 		554.2
(-1.3)
P 		595.9
(-1)
P 		666
avr 889.5
(3) 		779
(1.7) 		386.9
(-3) 		411.2
(-2.7) 		566.8
(-0.9) 		598.4
(-0.5) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21235
Sequence Type Exemplar sequence
Representative Public ID CEK129H4R NCBI
Target Description CEK129H4R_rc /REP_DB=TREMBL Accession /GB=D65029 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk129h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064787 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-4) (gei-4) mRNA, complete cds. 11/11 None
W07B3.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:344213:348432:-1 gene:W07B3.2 11/11 None
W07B3.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:344306:348426:-1 gene:W07B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175195 6 1 NM_001027640 172126_x_at (11), 184496_s_at (11)
NM_064787 172126_x_at (11), 174934_at (11), 184496_s_at (11)
NM_064788 172126_x_at (10), 184496_s_at (11)
NM_064789 172126_x_at (11), 184496_s_at (11)
NM_181925 172126_x_at (10), 184496_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:344329-344676(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07B3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68913 Gex interacting protein protein 4, isoform a [Caenorhabditis elegans] ref|NP_497188.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAU20837 Gex interacting protein protein 4, isoform f [Caenorhabditis elegans] ref|NP_001022811.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
blast AAC68910 Gex interacting protein protein 4, isoform b [Caenorhabditis elegans] ref|NP_497190.1| GEX Interacting protein family member (gei-4) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174934_AT
ttttcactgtgacccaattttttgtttcatttttctgaaacccccattaccaataatttc
cagatattctcattctcaagaacctcctctcaaatatccgaacaaaccctgcgctaccgt
gaaatctgccttaaacccacccccatctagaactacctgaaaatccatgttatttttaca
ttatcctttttttcccccatttcttgttttaaagaaaatattcaccctgcgtctcgaaat
tcttatactctatccccatccctctcccacacaaaatcctctccaaatttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCACTGTGACCCAATTTTTTGT 552 675 20 Antisense
TTCTGAAACCCCCATTACCAATAAT 353 693 52 Antisense
ATAATTTCCAGATATTCTCATTCTC 72 27 72 Antisense
CAAGAACCTCCTCTCAAATATCCGA 242 169 96 Antisense
AAATATCCGAACAAACCCTGCGCTA 301 117 111 Antisense
GCTACCGTGAAATCTGCCTTAAACC 389 299 132 Antisense
CCCCCATCTAGAACTACCTGAAAAT 137 259 159 Antisense
AAAGAAAATATTCACCCTGCGTCTC 464 121 230 Antisense
CACCCTGCGTCTCGAAATTCTTATA 356 201 242 Antisense
TCGAAATTCTTATACTCTATCCCCA 512 599 253 Antisense
CACAAAATCCTCTCCAAATTTCCAA 369 195 289 Antisense
Sequence Source Affymetrix Proprietary Database