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[174933_at]

Description CEK015BZR_rc /REP_DB=TREMBL Accession /GB=D27606 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15b12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 59      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 83      6grp_total > 49      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 508.3
(0.9)
P 		373.2
(-3)
P 		447.3
(-0.9)
P 		581.5
(3)
P 		208
B 498.6
(-0.4)
P 		383.8
(-2.7)
P 		367.3
(-3)
P 		666.1
(3)
P 		299
C 455.3
(-2.8)
P 		451.3
(-3)
P 		461.6
(-2.5)
P 		588.6
(3)
P 		137
avr 487.4
(-0.6) 		402.8
(-3) 		425.4
(-2.4) 		612.1
(3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 650.4
(1.6)
P 		504.7
(0)
P 		237.8
(-3)
P 		328
(-2)
P 		642.8
(1.6)
P 		771.1
(3)
P 		533
B 733.5
(3)
P 		593.6
(1.3)
P 		253
(-3)
P 		446
(-0.6)
P 		506.7
(0.2)
P 		720.6
(2.8)
P 		481
C 568.7
(2.4)
P 		511.3
(0.7)
P 		419.5
(-2)
P 		384.9
(-3)
P 		541
(1.6)
P 		588.5
(3)
P 		204
avr 650.9
(2.3) 		536.5
(0.6) 		303.4
(-3) 		386.3
(-1.7) 		563.5
(1) 		693.4
(3) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 185.1
(3)
P 		81
(-3)
P 		116.9
(-0.9)
P 		85.1
(-2.8)
P 		104
B 159
(3)
P 		94.8
(-2.2)
P 		85.1
(-3)
P 		141.9
(1.6)
P 		74
C 150.7
(2)
P 		129.8
(-0)
P 		160.9
(3)
P 		99.2
(-3)
P 		62
avr 164.9
(3) 		101.9
(-3) 		121
(-1.2) 		108.7
(-2.4) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 119.9
(-0.1)
P 		179.5
(2.4)
P 		51.8
(-3)
P 		83.2
(-1.7)
P 		194
(3)
P 		187.7
(2.7)
P 		142
B 255.2
(2.6)
P 		197.6
(0.9)
P 		61.4
(-3)
P 		118.1
(-1.4)
P 		205.9
(1.2)
P 		268.7
(3)
P 		207
C 210.8
(3)
P 		156
(0.5)
P 		106.8
(-1.7)
P 		77.4
(-3)
P 		175.1
(1.4)
P 		197
(2.4)
P 		133
avr 195.3
(2.1) 		177.7
(1.3) 		73.3
(-3) 		92.9
(-2.2) 		191.7
(1.9) 		217.8
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20602
Sequence Type Exemplar sequence
Representative Public ID CEK015BZR NCBI
Target Description CEK015BZR_rc /REP_DB=TREMBL Accession /GB=D27606 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063456 NCBI Caenorhabditis elegans T01B7.6 (T01B7.6) mRNA, complete cds. 11/11 None
T01B7.6 ENSEMBL cdna:known chromosome:CEL140:II:8722419:8725450:1 gene:T01B7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8724969-8725422(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B7.6
Entrez Gene 174396 Entrez gene
SwissProt Q22047 EMBL-EBI
WormBase CE35362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91299 Hypothetical protein T01B7.6 [Caenorhabditis elegans] ref|NP_495857.2| T01B7.6 [Caenorhabditis elegans] 0.0
blast CAE59723 Hypothetical protein CBG03159 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174933_AT
tttttcattttctcgtttatccatctttcctctaatatatgtccggatagatttccgaca
tctatcattttcaaattgctttccttaaactggcgtgggccgcccttgagaaatcataaa
atgcccctttcatagctcactgttccctgttctcatgactatcccaccatcccgttctca
tgacttttcgacattttctcgagtcgcccagtgcttctccccctctgacgagatactcac
acaacctgttctatctttttatcatcttgtattagtttatatcactattttataatttcc
aacctataactgaaaacagttcaaattcatcatgtctccactcagttttattctttgttt
ttttttgtattgccatcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCATTTTCTCGTTTATCCATC 356 675 52 Antisense
TTTATCCATCTTTCCTCTAATATAT 128 675 67 Antisense
TCTTTCCTCTAATATATGTCCGGAT 424 613 75 Antisense
TGTCCGGATAGATTTCCGACATCTA 623 557 91 Antisense
GATTTCCGACATCTATCATTTTCAA 675 427 101 Antisense
GGGCCGCCCTTGAGAAATCATAAAA 21 489 148 Antisense
ATAAAATGCCCCTTTCATAGCTCAC 339 25 167 Antisense
CCGTTCTCATGACTTTTCGACATTT 220 265 223 Antisense
GTTCAAATTCATCATGTCTCCACTC 147 445 370 Antisense
GTCTCCACTCAGTTTTATTCTTTGT 576 469 385 Antisense
GTTTTTTTTTGTATTGCCATCAACT 247 447 408 Antisense
Sequence Source Affymetrix Proprietary Database