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[174932_at]

Description CEK129C2R_rc /REP_DB=TREMBL Accession /GB=D64988 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk129c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 61      4grp_high_8_8 > 26      6grp_highest_nonorm > 81      6grp_total > 39      4grp_total > 30      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 195.9
(3)
P 		115
(-3)
P 		133.3
(-1.6)
P 		156.2
(0.1)
P 		81
B 125.8
(-1.7)
P 		177.9
(3)
P 		111.9
(-3)
P 		167.1
(2)
P 		66
C 273.9
(3)
P 		179.7
(-1.1)
P 		135.7
(-3)
P 		184.5
(-0.9)
P 		138
avr 198.5
(3) 		157.5
(-0.4) 		127
(-3) 		169.3
(0.5) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 243.8
(0.4)
P 		224.2
(-0.5)
P 		225.7
(-0.4)
P 		167.8
(-3)
P 		301.7
(3)
P 		228.8
(-0.3)
P 		134
B 323.2
(3)
P 		253.5
(0.9)
P 		128.2
(-3)
P 		250
(0.7)
P 		255.3
(0.9)
P 		287.9
(1.9)
P 		195
C 333.1
(3)
P 		240.9
(-1.4)
P 		207.9
(-3)
P 		216.7
(-2.6)
P 		270.1
(-0)
P 		247.6
(-1.1)
P 		125
avr 300
(3) 		239.5
(-0.2) 		187.3
(-3) 		211.5
(-1.7) 		275.7
(1.7) 		254.8
(0.6) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 71.3
(3)
P 		25
(-2.7)
P 		34.8
(-1.5)
P 		22.9
(-3)
P 		48
B 40.1
(1.7)
P 		43.9
(3)
P 		25.9
(-3)
P 		35.6
(0.2)
P 		18
C 90.7
(3)
P 		51.7
(-0.9)
P 		47.3
(-1.4)
P 		31.1
(-3)
P 		60
avr 67.4
(3) 		40.2
(-1.4) 		36
(-2) 		29.9
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 44.9
(-2.7)
P 		79.7
(1.6)
P 		49.2
(-2.2)
P 		42.5
(-3)
P 		91
(3)
P 		55.7
(-1.4)
P 		49
B 112.4
(3)
P 		84.4
(0.9)
P 		31.1
(-3)
P 		66.2
(-0.4)
P 		103.7
(2.4)
P 		107.4
(2.6)
P 		81
C 123.5
(3)
P 		73.5
(-0.8)
P 		52.9
(-2.3)
P 		43.6
(-3)
P 		87.4
(0.3)
P 		82.9
(-0)
P 		80
avr 93.6
(3) 		79.2
(1.2) 		44.4
(-3) 		50.8
(-2.2) 		94
(3) 		82
(1.5) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20204
Sequence Type Exemplar sequence
Representative Public ID CEK129C2R NCBI
Target Description CEK129C2R_rc /REP_DB=TREMBL Accession /GB=D64988 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk129c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK484.4a ENSEMBL cdna:known chromosome:CEL140:I:6078391:6086982:-1 gene:ZK484.4 11/11 None
ZK484.4b ENSEMBL cdna:known chromosome:CEL140:I:6078397:6086982:-1 gene:ZK484.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6078400-6078727(-) 93.27 100.0
Public Domain and Genome References
Ensembl ZK484.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39392 Hypothetical protein ZK484.4a [Caenorhabditis elegans] ref|NP_491752.1| ZK484.4a [Caenorhabditis elegans] 0.0
blast AAK39393 Hypothetical protein ZK484.4b [Caenorhabditis elegans] ref|NP_491753.1| ZK484.4b [Caenorhabditis elegans] 0.0
blast CAE72924 Hypothetical protein CBG20244 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174932_AT
tctaattatgtttattggtttttcgagtactttccctcctttctccatttgtctgcaaaa
tttcatctgttaccatgttctcctgtttttattcaaatctttataattgtttttttttca
aatttttctctcaattaccaatgatctttccttttttctttaatgccaattgcatattta
tattttaatttatttctgttttaaccgagatatctaaattcttacctcctattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTAATTATGTTTATTGGTTTTTCG 578 613 47 Antisense
TCCTTTCTCCATTTGTCTGCAAAAT 141 593 83 Antisense
GTCTGCAAAATTTCATCTGTTACCA 568 471 97 Antisense
CAAAATTTCATCTGTTACCATGTTC 677 189 102 Antisense
TACCATGTTCTCCTGTTTTTATTCA 604 649 117 Antisense
GTTCTCCTGTTTTTATTCAAATCTT 92 443 123 Antisense
AAATTTTTCTCTCAATTACCAATGA 577 89 166 Antisense
TTACCAATGATCTTTCCTTTTTTCT 295 681 181 Antisense
TCCTTTTTTCTTTAATGCCAATTGC 203 591 195 Antisense
ATTTCTGTTTTAACCGAGATATCTA 356 17 238 Antisense
TATCTAAATTCTTACCTCCTATTCC 35 659 257 Antisense
Sequence Source Affymetrix Proprietary Database