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[174931_at]

Description CEK109A3R_rc /REP_DB=TREMBL Accession /GB=D72767 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109a3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 73      6grp_total > 90      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 690.5
(3)
P 		408.1
(-3)
P 		689.4
(3)
P 		674.9
(2.7)
P 		282
B 639
(3)
P 		614.2
(-0.4)
P 		595.4
(-3)
P 		598.2
(-2.6)
P 		44
C 752
(2.8)
P 		658.5
(-0.2)
P 		569
(-3)
P 		758.2
(3)
P 		189
avr 693.8
(3) 		560.3
(-3) 		617.9
(-0.4) 		677.1
(2.2) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 737.8
(3)
P 		503.6
(-1.2)
P 		537.3
(-0.6)
P 		710.6
(2.5)
P 		554.8
(-0.3)
P 		406.4
(-3)
P 		331
B 578.3
(0.2)
P 		460.9
(-2.5)
P 		472.4
(-2.2)
P 		700.1
(3)
P 		658.9
(2.1)
P 		439.4
(-3)
P 		261
C 543.6
(-0.2)
P 		530.3
(-0.6)
P 		509.9
(-1.2)
P 		508.1
(-1.2)
P 		654.9
(3)
P 		447.1
(-3)
P 		208
avr 619.9
(2.4) 		498.3
(-1.1) 		506.5
(-0.8) 		639.6
(3) 		622.9
(2.5) 		431
(-3) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 251.4
(3)
P 		88.6
(-3)
P 		180.2
(0.4)
P 		98.8
(-2.6)
P 		163
B 203.8
(3)
P 		151.7
(-1.1)
P 		138
(-2.2)
P 		127.5
(-3)
P 		76
C 248.9
(3)
P 		189.3
(0)
P 		198.3
(0.5)
P 		127.8
(-3)
P 		121
avr 234.7
(3) 		143.2
(-1.7) 		172.2
(-0.2) 		118
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 136
(-0.3)
P 		179.1
(2.9)
P 		117
(-1.7)
P 		180.2
(3)
P 		167.4
(2.1)
P 		98.9
(-3)
P 		81
B 201.2
(0.4)
P 		153.4
(-1.5)
P 		114.7
(-3)
P 		185.4
(-0.2)
P 		267.7
(3)
P 		163.9
(-1.1)
P 		153
C 201.5
(2.4)
P 		161.8
(0.3)
P 		129.8
(-1.5)
P 		102.2
(-3)
P 		211.9
(3)
P 		149.7
(-0.4)
P 		110
avr 179.6
(0.7) 		164.8
(-0.2) 		120.5
(-3) 		155.9
(-0.8) 		215.7
(3) 		137.5
(-1.9) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22468
Sequence Type Exemplar sequence
Representative Public ID CEK109A3R NCBI
Target Description CEK109A3R_rc /REP_DB=TREMBL Accession /GB=D72767 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk109a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076036 NCBI Caenorhabditis elegans C43H6.3 (C43H6.3) mRNA, complete cds. 11/11 None
C43H6.3 ENSEMBL cdna:known chromosome:CEL140:X:2407461:2409537:1 gene:C43H6.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2409206-2409527(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.3
Entrez Gene 180545 Entrez gene
SwissProt Q18587 EMBL-EBI
WormBase CE06954 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582701_AT myotrophin cfa
CANINE_2:CFA.10529.1.S2_AT myotrophin cfa
CANINE_2:CFAAFFX.5970.1.S1_S_AT myotrophin cfa
CANINE_2:CFA.8951.1.A1_AT Myotrophin cfa
CANINE:1585910_AT Myotrophin cfa
DROSOPHILA_2:1633260_AT dm
CHICKEN:GGA.4342.1.S1_AT myotrophin gga
CHICKEN:GGAAFFX.13221.1.S1_S_AT myotrophin gga
HG-U133B:224656_S_AT myotrophin hs
HG-U133_PLUS_2:224656_S_AT myotrophin hs
HU35KSUBA:RC_AA055475_AT myotrophin hs
HU35KSUBA:RC_AA428594_AT myotrophin hs
HU35KSUBA:AA486946_AT myotrophin hs
U133_X3P:HS.21321.1.A1_3P_AT myotrophin hs
HG-U95B:45306_AT myotrophin hs
HG-U95C:64202_AT myotrophin hs
HG-U95E:76577_AT myotrophin hs
HG-U95B:44500_R_AT Myotrophin hs
HU35KSUBC:RC_N23029_AT Myotrophin hs
MOUSE430_2:1420472_AT myotrophin mm
MOUSE430A_2:1420472_AT myotrophin mm
MOE430A:1420472_AT myotrophin mm
MOUSE430A_2:1420475_AT myotrophin mm
MOUSE430_2:1420475_AT myotrophin mm
MOE430A:1420475_AT myotrophin mm
MOUSE430A_2:1420474_AT myotrophin mm
MOE430A:1420474_AT myotrophin mm
MOUSE430_2:1420474_AT myotrophin mm
MOE430A:1420473_AT myotrophin mm
MOUSE430A_2:1420473_AT myotrophin mm
MOUSE430_2:1420473_AT myotrophin mm
MU11KSUBA:D78188_S_AT myotrophin mm
MG-U74AV2:160468_AT myotrophin mm
MOE430A:1437457_A_AT myotrophin mm
MOUSE430A_2:1437457_A_AT myotrophin mm
MOUSE430_2:1437457_A_AT myotrophin mm
MOE430B:1459597_AT myotrophin mm
MOUSE430_2:1459597_AT myotrophin mm
MU19KSUBB:TC27439_S_AT Myotrophin (Mtpn), mRNA mm
MU19KSUBC:TC36183_AT Myotrophin (Mtpn), mRNA mm
MU19KSUBC:TC40896_S_AT Myotrophin (Mtpn), mRNA mm
RG-U34A:RC_AI105463_AT myotrophin rn
RG-U34C:R46957_S_AT myotrophin rn
RG-U34C:RC_AI170291_AT myotrophin rn
RAE230A:1371841_AT myotrophin rn
RAT230_2:1371841_AT myotrophin rn
RAE230A:1387786_AT myotrophin rn
RAT230_2:1387786_AT myotrophin rn
RAE230A:1387785_AT myotrophin rn
RAT230_2:1387785_AT myotrophin rn
RAE230B:1383071_AT myotrophin rn
RAT230_2:1383071_AT myotrophin rn
RG-U34C:RC_AI072711_AT Myotrophin rn
RG-U34C:RC_AI228667_AT Myotrophin rn
Protein Similarities
Method ID Description E-Value
blast AAA96086 Hypothetical protein C43H6.3 [Caenorhabditis elegans] ref|NP_508437.1| C43H6.3 [Caenorhabditis elegans] 1.0E-59
blast CAE58881 Hypothetical protein CBG02114 [Caenorhabditis briggsae] 5.0E-51
blast CAC38782 Myol protein [Suberites domuncula] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-7
Pfam IPR002110 EMBL-EBI Ankyrin 8.5E-7
Sequence
Target Sequence 
>C. ELEGANS:174931_AT
tattcaccattaaatctcgattgcggcattttgtgtacttttttacttttttatcttctt
ccaaatgtggaattttcatgttcacttctttttctctctttcgctttttagtttcattgt
gatgtcaatttcaatcatcgatcttgttccttccccccattcattgaaatcctgtcacat
atgtgtctgtttccgatgcgttttccttattccgttgcttatttcgttcatccacatatt
gtctcggttctctgctttttttgttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCACCATTAAATCTCGATTGCG 686 661 19 Antisense
GATTGCGGCATTTTGTGTACTTTTT 112 435 37 Antisense
TTACTTTTTTATCTTCTTCCAAATG 691 633 61 Antisense
GTGGAATTTTCATGTTCACTTCTTT 468 491 85 Antisense
TTCTCTCTTTCGCTTTTTAGTTTCA 438 691 110 Antisense
TTCAATCATCGATCTTGTTCCTTCC 388 685 148 Antisense
TTCCCCCCATTCATTGAAATCCTGT 69 697 169 Antisense
GAAATCCTGTCACATATGTGTCTGT 114 363 184 Antisense
CATATGTGTCTGTTTCCGATGCGTT 295 215 196 Antisense
TATTCCGTTGCTTATTTCGTTCATC 384 665 226 Antisense
TCGGTTCTCTGCTTTTTTTGTTGCA 278 607 262 Antisense
Sequence Source Affymetrix Proprietary Database