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[174930_at]

Description CEK119F9R_rc /REP_DB=TREMBL Accession /GB=D66626 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 21      6grp_total > 13      4grp_total > 51      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1283
1 2 3 4 range
A 1534.1
(1.7)
P 		1798.9
(3)
P 		1722.6
(2.6)
P 		581.7
(-3)
P 		1217
B 1301.9
(0.9)
P 		1716.2
(3)
P 		1415.2
(1.5)
P 		515.6
(-3)
P 		1201
C 1138.6
(-0.2)
P 		1775.9
(3)
P 		1518.2
(1.7)
P 		571.8
(-3)
P 		1204
avr 1324.9
(0.8) 		1763.7
(3) 		1552
(1.9) 		556.4
(-3) 		1207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1220
1 2 3 4 5 6 range
A 1910.3
(3)
P 		1157.1
(-0.9)
P 		1061.4
(-1.4)
P 		1063.2
(-1.4)
P 		1261.6
(-0.4)
P 		760.9
(-3)
P 		1149
B 1660.6
(3)
P 		1506.5
(2)
P 		875
(-2.2)
P 		1215.5
(0)
P 		757.8
(-3)
P 		913.3
(-2)
P 		903
C 922.2
(-1.4)
P 		1215.8
(0.7)
P 		1537.5
(3)
P 		1502.9
(2.8)
P 		710.6
(-2.9)
P 		690.1
(-3)
P 		847
avr 1497.7
(3) 		1293.1
(1.3) 		1158
(0.1) 		1260.5
(1) 		910
(-2) 		788.1
(-3) 		710
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 558.6
(3)
P 		390.5
(0.9)
P 		450.3
(1.6)
P 		85.2
(-3)
P 		473
B 415.2
(2.8)
P 		423.9
(3)
P 		327.9
(1.2)
P 		109.9
(-3)
P 		314
C 376.9
(0.9)
P 		510.6
(2.7)
P 		529.1
(3)
P 		96.4
(-3)
P 		433
avr 450.2
(3) 		441.7
(2.9) 		435.8
(2.8) 		97.2
(-3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 352.1
(1.4)
P 		411.5
(3)
P 		231.2
(-1.8)
P 		269.6
(-0.8)
P 		380.7
(2.2)
P 		185.3
(-3)
P 		226
B 577.8
(3)
P 		501.5
(1.7)
P 		212.5
(-3)
P 		321.9
(-1.2)
P 		307.9
(-1.4)
P 		340.6
(-0.9)
P 		365
C 341.8
(1.2)
P 		371
(2.2)
P 		391.3
(3)
P 		302.2
(-0.3)
P 		230
(-3)
P 		231
(-3)
P 		161
avr 423.9
(2.9) 		428
(3) 		278.3
(-2.1) 		297.9
(-1.4) 		306.2
(-1.2) 		252.3
(-3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22172
Sequence Type Exemplar sequence
Representative Public ID CEK119F9R NCBI
Target Description CEK119F9R_rc /REP_DB=TREMBL Accession /GB=D66626 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk119f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076437 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-22) (pes-22) mRNA, complete cds. 11/11 None
K05B2.5.1 ENSEMBL cdna:known chromosome:CEL140:X:4921219:4926899:-1 gene:K05B2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4921339-4921670(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-22
Ensembl K05B2.5
Entrez Gene 180766 Entrez gene
SwissProt Q9GYN2 EMBL-EBI
WormBase CE34052 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601695_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 cfa
CANINE_2:CFA.13436.1.A1_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 cfa
CANINE_2:CFAAFFX.16663.1.S1_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 cfa
DROSOPHILA_2:1630968_AT dm
DROSGENOME1:147949_AT dm
CHICKEN:GGAAFFX.25679.1.S1_S_AT similar to solute carrier family 16 (monocarboxylic acid transporters), member 14 gga
U133_X3P:HS.132554.0.A1_3P_S_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
U133_X3P:HS.132554.0.A1_3P_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
HG-U133_PLUS_2:238029_S_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
HG-U133B:238029_S_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
HG-U95E:74782_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 hs
MOUSE430_2:1430629_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 mm
MOE430B:1430629_AT solute carrier family 16 (monocarboxylic acid transporters), member 14 mm
MOE430B:1439661_AT Solute carrier family 16 (monocarboxylic acid transporters), member 14, mRNA (cDNA clone MGC:32427 IMAGE:5041164) mm
MOUSE430_2:1439661_AT Solute carrier family 16 (monocarboxylic acid transporters), member 14, mRNA (cDNA clone MGC:32427 IMAGE:5041164) mm
Protein Similarities
Method ID Description E-Value
blast AAF99981 Patterned expression site protein 22 [Caenorhabditis elegans] ref|NP_508838.3| Patterned Expression Site family member (pes-22) [Caenorhabditis elegans] 0.0
blast T16564 hypothetical protein K05B2.5 - Caenorhabditis elegans 0.0
blast CAE68667 Hypothetical protein CBG14568 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508838.3 12 22-44,57-79,89-111,118-140,150-172,179-196,457-479,492-511,521-543,550-572,587-606,615-637
K05B2.5.1 12 22-44,57-79,89-111,118-140,150-172,179-196,457-479,492-511,521-543,550-572,587-606,615-637
Sequence
Target Sequence 
>C. ELEGANS:174930_AT
tattcatatctttcgctttttttcctctgtgtttgactatgacttctgtcatttcctcga
tgttctttatttgggtacgtttccctttttcctgtctcaatcatctctgttgttgtttgc
aaatatccaatctttaaaaaatccacatttaggtaaaattgtaattctttgtgtctccat
tcccatgtcgaatgacctcctcggatattgcatttggttgttttttgttcccttcctggc
ttgtttcattcattcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCATATCTTTCGCTTTTTTTCC 678 663 52 Antisense
TTTTCCTCTGTGTTTGACTATGACT 434 677 71 Antisense
GACTATGACTTCTGTCATTTCCTCG 631 371 86 Antisense
TTCCTCGATGTTCTTTATTTGGGTA 585 695 104 Antisense
CATCTCTGTTGTTGTTTGCAAATAT 271 213 153 Antisense
TTGTAATTCTTTGTGTCTCCATTCC 596 705 210 Antisense
GTCTCCATTCCCATGTCGAATGACC 495 469 224 Antisense
GTCGAATGACCTCCTCGGATATTGC 267 473 238 Antisense
GACCTCCTCGGATATTGCATTTGGT 314 383 245 Antisense
TGCATTTGGTTGTTTTTTGTTCCCT 35 579 260 Antisense
TCCTGGCTTGTTTCATTCATTCATA 50 595 285 Antisense
Sequence Source Affymetrix Proprietary Database