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[174929_at]

Description CEK025DYR_rc /REP_DB=TREMBL Accession /GB=D33042 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 0      6grp_total > 05      4grp_total > 11      6grp_cgc > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1667
1 2 3 4 range
A 1838.3
(-2)
P 		1677.3
(-3)
P 		1841.1
(-2)
P 		2679.3
(3)
P 		1002
B 1911.2
(-1)
P 		1911.3
(-1)
P 		1352.4
(-3)
P 		3019.1
(3)
P 		1667
C 1767.3
(-3)
P 		2040.9
(1.3)
P 		1914.1
(-0.7)
P 		2147.3
(3)
P 		380
avr 1838.9
(-2.1) 		1876.5
(-1.9) 		1702.5
(-3) 		2615.2
(3) 		913

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1130
1 2 3 4 5 6 range
A 2183.9
(3)
P 		1762.8
(0.4)
P 		1509.9
(-1.2)
P 		1324.9
(-2.3)
P 		1821.9
(0.8)
P 		1213.9
(-3)
P 		970
B 2145.2
(3)
P 		1840
(1.3)
P 		1054.1
(-3)
P 		1901.1
(1.7)
P 		1629.2
(0.2)
P 		1243.7
(-2)
P 		1091
C 2019.3
(3)
P 		1766
(0.9)
P 		1559
(-0.8)
P 		1292.5
(-3)
P 		1823.7
(1.4)
P 		1402
(-2.1)
P 		727
avr 2116.1
(3) 		1789.6
(0.6) 		1374.3
(-2.4) 		1506.2
(-1.4) 		1758.3
(0.4) 		1286.5
(-3) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 669.3
(3)
P 		364.1
(-3)
P 		481.3
(-0.7)
P 		392.2
(-2.4)
P 		305
B 609.5
(2.4)
P 		472
(-0.1)
P 		313.4
(-3)
P 		643.4
(3)
P 		330
C 585
(1.4)
P 		586.8
(1.4)
P 		667.1
(3)
P 		362.1
(-3)
P 		305
avr 621.3
(3) 		474.3
(-2.7) 		487.3
(-2.2) 		465.9
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 493
1 2 3 4 5 6 range
A 402.6
(-1.1)
P 		626.9
(3)
P 		328.8
(-2.4)
P 		336
(-2.3)
P 		549.8
(1.6)
P 		295.5
(-3)
P 		331
B 746.4
(3)
P 		612.5
(1.4)
P 		256
(-3)
P 		503.5
(0)
P 		661.9
(2)
P 		463.8
(-0.5)
P 		490
C 748.5
(3)
P 		538.9
(0.4)
P 		396.8
(-1.3)
P 		259.9
(-3)
P 		590.1
(1.1)
P 		469.3
(-0.4)
P 		489
avr 632.5
(3) 		592.8
(2.2) 		327.2
(-3) 		366.5
(-2.2) 		600.6
(2.4) 		409.5
(-1.4) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22328
Sequence Type Exemplar sequence
Representative Public ID CEK025DYR NCBI
Target Description CEK025DYR_rc /REP_DB=TREMBL Accession /GB=D33042 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078057 NCBI Caenorhabditis elegans EPsiN (endocytic protein) homolog family member (epn-1) (epn-1) mRNA, complete cds. 11/11 None
T04C10.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:14815719:14818425:-1 gene:T04C10.2 11/11 None
T04C10.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:14815734:14818430:-1 gene:T04C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181577 2 1 NM_078057 174929_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14815743-14816411(-) 100.0 100.0
Public Domain and Genome References
Ensembl T04C10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35825 Hypothetical protein T04C10.2b [Caenorhabditis elegans] ref|NP_510458.1| EPsiN (endocytic protein) homolog family member (epn-1) [Caenorhabditis elegans] 0.0
blast T24447 hypothetical protein T04C10.2 - Caenorhabditis elegans 0.0
blast CAC35824 Hypothetical protein T04C10.2a [Caenorhabditis elegans] ref|NP_510459.1| EPsiN (endocytic protein) homolog family member (epn-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 0.0032
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:174929_AT
tatatctattgcaagcctatcctccttttacagcctgtcattgcttgtttgcatcttctc
catcccatccccactaacttgtcatcctcctttggctaaacttgactctttttttttgaa
gtaattgttggtgacggttcaaacatttcgtccccacccatttgccttctcttctcccaa
aatttttgggaattattttatactttttctgtacaattttcgtctcccgcaacttgtctt
gaattaaaccgttataaaacgatacgattgatgaagttgagttgttcaatttcttcactc
tttttttcttttttggctccaccctttccttcaagttttcccacatcttttttttcttcg
tgtgtatggtattttttgtagcgtgtctgattgaaggaagtcttctttttttttctcttt
attttctttggttgcttctaaataacatcatatcaagcaaatgctgtcgactaacagtaa
tttggagacataacattttttaggagatgcatatgacttcccacatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATCTATTGCAAGCCTATCCTCC 353 661 98 Antisense
CTCCTTTTACAGCCTGTCATTGCTT 305 235 119 Antisense
GCCTGTCATTGCTTGTTTGCATCTT 508 283 130 Antisense
ATCCTCCTTTGGCTAAACTTGACTC 297 31 181 Antisense
TGACGGTTCAAACATTTCGTCCCCA 613 567 229 Antisense
TTTTCTGTACAATTTTCGTCTCCCG 503 677 302 Antisense
TCTCCCGCAACTTGTCTTGAATTAA 471 611 320 Antisense
ATCTTTTTTTTCTTCGTGTGTATGG 348 31 442 Antisense
ATGGTATTTTTTGTAGCGTGTCTGA 681 45 463 Antisense
CTCTTTATTTTCTTTGGTTGCTTCT 634 229 512 Antisense
GAGATGCATATGACTTCCCACATTA 601 395 601 Antisense
Sequence Source Affymetrix Proprietary Database