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[174928_at]

Description CEK085DXR_rc /REP_DB=TREMBL Accession /GB=D72009 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk85d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 57      6grp_total > 38      4grp_total > 50      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1362
1 2 3 4 range
A 2212.4
(-1.9)
P 		2554.2
(0.7)
P 		2850.7
(3)
P 		2068.7
(-3)
P 		782
B 2107.7
(-2.5)
P 		3150.5
(3)
P 		2831.5
(1.3)
P 		2006.2
(-3)
P 		1144
C 2400.8
(-0.7)
P 		3243.5
(3)
P 		2769.9
(0.9)
P 		1881.3
(-3)
P 		1362
avr 2240.3
(-1.5) 		2982.7
(3) 		2817.4
(2) 		1985.4
(-3) 		997

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2233
1 2 3 4 5 6 range
A 3899.3
(3)
P 		2717.2
(-0.4)
P 		1898.1
(-2.7)
P 		1797.4
(-3)
P 		2765.5
(-0.2)
P 		2885.8
(0.1)
P 		2102
B 3563.1
(3)
P 		2413
(-1.1)
P 		1890.1
(-3)
P 		2315.5
(-1.5)
P 		2175.8
(-2)
P 		2948.3
(0.8)
P 		1673
C 3669
(3)
P 		2337.8
(-1)
P 		2084.3
(-1.7)
P 		1666.2
(-3)
P 		2620.7
(-0.1)
P 		2912.1
(0.7)
P 		2003
avr 3710.5
(3) 		2489.3
(-1.1) 		1957.5
(-2.9) 		1926.4
(-3) 		2520.7
(-1) 		2915.4
(0.3) 		1784
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 663
1 2 3 4 range
A 805.5
(3)
P 		554.5
(0)
P 		745.2
(2.3)
P 		302.8
(-3)
P 		503
B 672.1
(1.2)
P 		778.1
(3)
P 		656.1
(0.9)
P 		427.5
(-3)
P 		351
C 794.7
(1.4)
P 		932.5
(2.7)
P 		965.4
(3)
P 		317.2
(-3)
P 		648
avr 757.4
(2.6) 		755
(2.5) 		788.9
(3) 		349.2
(-3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1025
1 2 3 4 5 6 range
A 718.8
(0.3)
P 		966.4
(3)
P 		413.4
(-3)
P 		455.9
(-2.5)
P 		834.5
(1.6)
P 		702.6
(0.1)
P 		553
B 1239.8
(3)
P 		803.2
(-0.4)
P 		459
(-3)
P 		613.3
(-1.8)
P 		884
(0.3)
P 		1099.4
(1.9)
P 		781
C 1359.9
(3)
P 		713.3
(-0.8)
P 		530.5
(-1.9)
P 		335.1
(-3)
P 		848
(0)
P 		974.9
(0.7)
P 		1025
avr 1106.2
(3) 		827.6
(0.4) 		467.6
(-3) 		468.1
(-3) 		855.5
(0.6) 		925.6
(1.3) 		639
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174928_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20257
Sequence Type Exemplar sequence
Representative Public ID CEK085DXR NCBI
Target Description CEK085DXR_rc /REP_DB=TREMBL Accession /GB=D72009 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk85d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059412 NCBI Caenorhabditis elegans C10G11.7 (C10G11.7) mRNA, complete cds. 11/11 None
C10G11.7.3 ENSEMBL cdna:known chromosome:CEL140:I:6293106:6297473:1 gene:C10G11.7 11/11 A 
C10G11.7.2 ENSEMBL cdna:known chromosome:CEL140:I:6293108:6297473:1 gene:C10G11.7 11/11 A 
C10G11.7.1 ENSEMBL cdna:known chromosome:CEL140:I:6293108:6297473:1 gene:C10G11.7 11/11 A 
C10G11.7.4 ENSEMBL cdna:known chromosome:CEL140:I:6293108:6297473:1 gene:C10G11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6297040-6297383(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G11.7
Entrez Gene 172326 Entrez gene
SwissProt P91027 EMBL-EBI
WormBase CE08086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42247 Hypothetical protein C10G11.7 [Caenorhabditis elegans] ref|NP_491813.1| C10G11.7 [Caenorhabditis elegans] 1.0E-126
blast CAE67156 Hypothetical protein CBG12581 [Caenorhabditis briggsae] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:174928_AT
tttgttcatcgttttaccattcttcatttcaaccaattttctcacctaataagactttaa
taatcgataattgatctataaaagtctatttttcaccaatctctcgattcatcaaacttt
ttttgtattttgataactattgtctcagctttctctttttgtgcttttcatcctccaaaa
gtgtgaagctcattaaatgagcctttccacttgattgattcgagatttttcctgtttttc
caaagttcaatctctattctctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTTCATCGTTTTACCATTCTTC 542 665 57 Antisense
TTTTACCATTCTTCATTTCAACCAA 201 675 68 Antisense
ATTTCAACCAATTTTCTCACCTAAT 530 15 82 Antisense
AAAGTCTATTTTTCACCAATCTCTC 167 123 137 Antisense
GATAACTATTGTCTCAGCTTTCTCT 476 423 188 Antisense
CTCAGCTTTCTCTTTTTGTGCTTTT 398 229 200 Antisense
TTTTTGTGCTTTTCATCCTCCAAAA 218 675 212 Antisense
CATCCTCCAAAAGTGTGAAGCTCAT 377 211 225 Antisense
CATTAAATGAGCCTTTCCACTTGAT 670 209 247 Antisense
GATTGATTCGAGATTTTTCCTGTTT 343 435 269 Antisense
CAAAGTTCAATCTCTATTCTCTCGC 414 193 297 Antisense
Sequence Source Affymetrix Proprietary Database