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[174927_at]

Description CEK121D1R_rc /REP_DB=TREMBL Accession /GB=D66703 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 08      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 75      6grp_total > 09      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 764.5
(3)
P 		423.6
(-3)
P 		531.1
(-1.1)
P 		581.9
(-0.2)
P 		341
B 642.1
(-1.6)
P 		609
(-2.4)
P 		583.3
(-3)
P 		842.5
(3)
P 		259
C 713.5
(1.2)
P 		655.2
(-0.9)
P 		762.1
(3)
P 		598.5
(-3)
P 		164
avr 706.7
(3) 		562.6
(-3) 		625.5
(-0.4) 		674.3
(1.7) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 955.2
(3)
P 		704
(-0.9)
P 		809.7
(0.7)
P 		721.6
(-0.6)
P 		884.3
(1.9)
P 		568.2
(-3)
P 		387
B 1251.9
(3)
P 		768
(-2.6)
P 		729.5
(-3)
P 		1001.4
(0.1)
P 		865.9
(-1.4)
P 		920
(-0.8)
P 		522
C 931.9
(1.7)
P 		773.9
(-0.3)
P 		566.5
(-3)
P 		1028.3
(3)
P 		769.1
(-0.4)
P 		979.4
(2.4)
P 		462
avr 1046.3
(3) 		748.6
(-2.2) 		701.9
(-3) 		917.1
(0.7) 		839.8
(-0.6) 		822.5
(-0.9) 		344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 278.4
(3)
P 		92
(-2.8)
P 		138.8
(-1.3)
P 		85.2
(-3)
P 		193
B 204.8
(3)
P 		150.4
(-1.7)
P 		135.2
(-3)
P 		179.5
(0.8)
P 		70
C 236.2
(1.9)
P 		188.4
(0.2)
P 		265.6
(3)
P 		100.9
(-3)
P 		165
avr 239.8
(3) 		143.6
(-1.9) 		179.9
(-0) 		121.9
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 176.1
(-1.2)
P 		250.4
(2.2)
P 		176.3
(-1.2)
P 		183
(-0.9)
P 		266.9
(3)
P 		138.3
(-3)
P 		129
B 435.6
(3)
P 		255.6
(-1.2)
P 		177.1
(-3)
P 		265.2
(-1)
P 		351.8
(1.1)
P 		343
(0.9)
P 		259
C 345.4
(3)
P 		236.1
(-0.3)
P 		144.2
(-3)
P 		206.8
(-1.1)
P 		248.9
(0.1)
P 		327.8
(2.5)
P 		201
avr 319
(3) 		247.4
(0.2) 		165.9
(-3) 		218.3
(-0.9) 		289.2
(1.8) 		269.7
(1.1) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22062
Sequence Type Exemplar sequence
Representative Public ID CEK121D1R NCBI
Target Description CEK121D1R_rc /REP_DB=TREMBL Accession /GB=D66703 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077276 NCBI Caenorhabditis elegans F19C6.2a (F19C6.2) mRNA, complete cds. 11/11 None
F19C6.2a ENSEMBL cdna:known chromosome:CEL140:X:10000869:10005273:1 gene:F19C6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181213 2 1 NM_077276 174927_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10004958-10005263(+) 100.0 100.0
Public Domain and Genome References
Ensembl F19C6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88050 Hypothetical protein F19C6.2a [Caenorhabditis elegans] ref|NP_509677.1| F19C6.2a [Caenorhabditis elegans] sp|Q09307|YQR2_CAEEL Hypothetical protein F19C6.2 in chromosome X 0.0
blast CAE58754 Hypothetical protein CBG01946 [Caenorhabditis briggsae] 0.0
blast CAB62803 Hypothetical protein F19C6.2b [Caenorhabditis elegans] ref|NP_509678.1| F19C6.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010770 EMBL-EBI SGT1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174927_AT
acaatatttgccttttatactgatatttaaagactatgcaatttcaaatttcaagatacc
tcttgatgccttaatttctttcaaaaattactacttctttcacaatgtgtcttccaaata
tgaaaaactttccgatgtcaacttttgctttcattttactaattcaatcaagctcactct
actcattttatgttttcttttcctgtctgcactttcatccgtcacccagttgtattttag
atgcgtggtagtttttggtattgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATATTTGCCTTTTATACTGATA 127 115 13 Antisense
GATACCTCTTGATGCCTTAATTTCT 699 423 67 Antisense
TTACTACTTCTTTCACAATGTGTCT 20 683 100 Antisense
TTCACAATGTGTCTTCCAAATATGA 359 685 111 Antisense
AACTTTCCGATGTCAACTTTTGCTT 697 137 138 Antisense
GTCAACTTTTGCTTTCATTTTACTA 622 463 149 Antisense
ATTCAATCAAGCTCACTCTACTCAT 651 11 174 Antisense
AGCTCACTCTACTCATTTTATGTTT 403 79 183 Antisense
ATCCGTCACCCAGTTGTATTTTAGA 622 37 229 Antisense
GTTGTATTTTAGATGCGTGGTAGTT 180 297 241 Antisense
TGCGTGGTAGTTTTTGGTATTGTCA 601 583 254 Antisense
Sequence Source Affymetrix Proprietary Database