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[174926_s_at]

Description CEK115F7R_rc /REP_DB=TREMBL Accession /GB=D73212 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk115f7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 16      4grp_high_8_8 > 43      6grp_total > 15      4grp_total > 53      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 471
1 2 3 4 range
A 610.2
(3)
P 		483.8
(1.4)
P 		364.4
(-0.1)
P 		138.8
(-3)
A 		471
B 382.5
(1.4)
P 		440.5
(3)
P 		279.8
(-1.5)
P 		225
(-3)
P 		216
C 488.9
(3)
P 		439.4
(1.8)
P 		317.8
(-1.1)
P 		239.4
(-3)
P 		250
avr 493.9
(3) 		454.6
(2.2) 		320.7
(-0.5) 		201.1
(-3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 769.6
(3)
P 		469
(-0.6)
P 		374.3
(-1.7)
P 		264.7
(-3)
P 		298.4
(-2.6)
P 		316.2
(-2.4)
P 		505
B 656.7
(3)
P 		573.2
(1.7)
P 		335.5
(-1.9)
P 		406
(-0.8)
P 		261.4
(-3)
P 		356.7
(-1.6)
P 		395
C 417.9
(1.4)
P 		496.6
(3)
P 		434.7
(1.7)
P 		262.4
(-1.9)
A 		263.3
(-1.9)
P 		209.3
(-3)
P 		287
avr 614.7
(3) 		512.9
(1.2) 		381.5
(-1.1) 		311
(-2.4) 		274.4
(-3) 		294.1
(-2.7) 		340
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 222.2
(3)
P 		105
(-0.5)
P 		95.2
(-0.8)
P 		20.3
(-3)
A 		202
B 122
(3)
P 		108.8
(1.9)
P 		64.8
(-1.6)
P 		47.9
(-3)
P 		74
C 161.8
(3)
P 		126.3
(1.2)
P 		110.8
(0.5)
P 		40.4
(-3)
P 		121
avr 168.7
(3) 		113.4
(0.5) 		90.3
(-0.6) 		36.2
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 141.9
(1.5)
P 		166.8
(3)
P 		81.5
(-2.1)
P 		67.1
(-3)
P 		90
(-1.6)
P 		77
(-2.4)
P 		100
B 228.5
(3)
P 		190.8
(1.5)
P 		81.5
(-3)
P 		107.5
(-1.9)
P 		106.2
(-2)
P 		133
(-0.9)
P 		147
C 154.9
(3)
P 		151.5
(2.8)
P 		110.6
(0.4)
P 		52.8
(-3)
A 		85.2
(-1.1)
P 		70.1
(-2)
P 		102
avr 175.1
(3) 		169.7
(2.7) 		91.2
(-2.1) 		75.8
(-3) 		93.8
(-1.9) 		93.4
(-1.9) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21520
Sequence Type Exemplar sequence
Representative Public ID CEK115F7R NCBI
Target Description CEK115F7R_rc /REP_DB=TREMBL Accession /GB=D73212 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk115f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F55A8.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:1902322:1917826:1 gene:F55A8.1 11/11 None
F55A8.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:1913446:1917826:1 gene:F55A8.1 11/11 None
F55A8.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:1913453:1917826:1 gene:F55A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1917472-1917822(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55A8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD36952 Egg laying defective protein 18 [Caenorhabditis elegans] ref|NP_500143.1| EGg Laying defective family member (egl-18) [Caenorhabditis elegans] gb|AAK32716.1| GATA-like transcription factor ELT-5 [Caenorhabditis elegans] 1.0E-169
blast AAR26006 GATA transcription factor EGL-18A [Caenorhabditis elegans] 1.0E-159
blast CAE67948 Hypothetical protein CBG13548 [Caenorhabditis briggsae] 3.0E-77
Protein Domains
Database ID Description E-Value
scop a.3.1.monodomain cytochrome c All alpha proteins; Cytochrome c; Cytochrome c; monodomain cytochrome c 0.25
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 9.8E-20
Sequence
Target Sequence 
>C. ELEGANS:174926_S_AT
taagcaatccttcatcattccattaccccttcagaaaaatacagtattaaataattttcc
gccaattttctaataataattgtgccccatttcccccaacttcaccgcgtgtttccgact
gtgagctttacctcctcctccgacaacttataataatagttaggctccgccccattctgc
aggaggcccctcccccaattctctgtgcatggttgtgttatattcacctcctcccaccac
tttgtcatttcacttgaatcatcatttttgcattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCAATCCTTCATCATTCCATTA 663 637 22 Antisense
CATTCCATTACCCCTTCAGAAAAAT 396 217 37 Antisense
CAGTATTAAATAATTTTCCGCCAAT 214 207 63 Antisense
TTTCCGCCAATTTTCTAATAATAAT 378 669 77 Antisense
TAATAATAATTGTGCCCCATTTCCC 175 635 92 Antisense
CTCCTCCGACAACTTATAATAATAG 487 235 156 Antisense
AATAATAGTTAGGCTCCGCCCCATT 552 171 173 Antisense
CCCCAATTCTCTGTGCATGGTTGTG 557 261 214 Antisense
TGGTTGTGTTATATTCACCTCCTCC 171 551 231 Antisense
CCACCACTTTGTCATTTCACTTGAA 605 273 255 Antisense
CTTGAATCATCATTTTTGCATTTTC 225 219 274 Antisense
Sequence Source Affymetrix Proprietary Database