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[174925_s_at] Ser/Thr protein phosphatase

Description CEK121B5R_rc /REP_DB=TREMBL Accession /GB=D66724 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121b5 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.3
(-3)
A 		6.2
(3)
A 		3.7
(-0.1)
A 		5.9
(2.6)
A 		5
B 4
(-1.4)
A 		8.9
(3)
A 		4
(-1.4)
A 		2.2
(-3)
A 		7
C 4.4
(3)
A 		2.7
(-1.3)
A 		2
(-3)
A 		2.3
(-2.3)
A 		2
avr 3.2
(-3) 		5.9
(3) 		3.2
(-3) 		3.5
(-2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.1
(-2)
A 		5.2
(-2)
A 		1.3
(-3)
A 		2.3
(-2.7)
A 		3.7
(-2.4)
A 		24.3
(3)
A 		23
B 1.4
(-2.9)
A 		1.6
(-2.8)
A 		1.3
(-3)
A 		4.8
(-1.1)
A 		7.5
(0.3)
A 		12.5
(3)
A 		11
C 3.4
(-2.6)
A 		2.8
(-2.7)
A 		1.7
(-3)
A 		4.4
(-2.4)
A 		23.7
(2.2)
A 		27.1
(3)
A 		25
avr 3.3
(-2.4) 		3.2
(-2.5) 		1.4
(-3) 		3.8
(-2.3) 		11.6
(0.1) 		21.3
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.5
(-3)
A 		1.4
(3)
A 		1
(0.3)
A 		0.9
(-0.3)
A 		1
B 1.3
(-0.2)
A 		2.2
(3)
A 		0.9
(-1.6)
A 		0.5
(-3)
A 		2
C 1.5
(3)
A 		0.8
(-0.8)
A 		0.7
(-1.4)
A 		0.4
(-3)
A 		1
avr 1.1
(0.3) 		1.5
(3) 		0.9
(-1) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-2.4)
A 		1.9
(-1.3)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		1.1
(-2.1)
A 		5.9
(3)
A 		6
B 0.5
(-2.7)
A 		0.5
(-2.7)
A 		0.3
(-3)
A 		1.3
(-1.6)
A 		3
(0.7)
A 		4.7
(3)
A 		4
C 1.2
(-2.4)
A 		0.9
(-2.7)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		7.7
(2)
A 		9.1
(3)
A 		9
avr 0.9
(-2.4) 		1.1
(-2.2) 		0.3
(-3) 		0.9
(-2.4) 		3.9
(0.4) 		6.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174925_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21355
Sequence Type Exemplar sequence
Representative Public ID CEK121B5R NCBI
Target Description CEK121B5R_rc /REP_DB=TREMBL Accession /GB=D66724 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk121b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070249 NCBI Caenorhabditis elegans C47A4.3 (C47A4.3) mRNA, complete cds. 11/11 A 
SNAP00000017715 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13741011:13742234:-1 11/11 None
GENEFINDER00000017722 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13741011:13744964:-1 11/11 None
C47A4.3 ENSEMBL cdna:known chromosome:CEL140:IV:13741011:13742234:-1 gene:C47A4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13741007-13741469(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ser/Thr protein phosphatase
Ensembl C47A4.3
Entrez Gene 178340 Entrez gene
SwissProt Q9U3L7 EMBL-EBI
WormBase CE19739 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB62794 Hypothetical protein C47A4.3 [Caenorhabditis elegans] ref|NP_502650.1| C47A4.3 [Caenorhabditis elegans] 0.0
blast AAY86224 Hypothetical protein C25A6.1 [Caenorhabditis elegans] 1.0E-154
blast NP_001023674 C25A6.1a [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-39
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017722 3 67-89,94-113,268-290
Sequence
Target Sequence 
>C. ELEGANS:174925_S_AT
caacgaggtgccgggtgcggattcggaagagattctgttctgaatttgtgctccgaattt
cagcttgacctggtctgtcgtgcccatcaagttgttcaagacggttatgagttctttgct
ggacggaaattggtgaccatcttctcggctcctcattactgtggtcaattcgacaactgt
gctgctttcatgtcttgcgacgagaagcttcagtgctcgttcgaaattctccgtccaaca
actggtcgcctcgagattcgcgagaagccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGAGGTGCCGGGTGCGGATTCG 250 187 28 Antisense
GCGGATTCGGAAGAGATTCTGTTCT 315 285 44 Antisense
GAGATTCTGTTCTGAATTTGTGCTC 504 397 56 Antisense
AATTTGTGCTCCGAATTTCAGCTTG 437 173 70 Antisense
GTGCTCCGAATTTCAGCTTGACCTG 697 477 75 Antisense
GAATTTCAGCTTGACCTGGTCTGTC 626 323 82 Antisense
TTCAGCTTGACCTGGTCTGTCGTGC 664 685 86 Antisense
GCTGGACGGAAATTGGTGACCATCT 653 293 145 Antisense
GGACGGAAATTGGTGACCATCTTCT 135 525 148 Antisense
CTGGTCGCCTCGAGATTCGCGAGAA 278 241 269 Antisense
GCCTCGAGATTCGCGAGAAGCCGTT 422 277 275 Antisense
Sequence Source Affymetrix Proprietary Database