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[174924_s_at]

Description CEK074AYR_rc /REP_DB=TREMBL Accession /GB=D71350 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk74a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 52      6grp_total > 41      4grp_total > 32      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 650.9
(-3)
P 		841.8
(-0.4)
P 		1099.6
(3)
P 		1008.5
(1.8)
P 		449
B 620.7
(-3)
P 		916
(2.2)
P 		925.7
(2.3)
P 		963.5
(3)
P 		343
C 622.5
(-3)
P 		843.6
(0.7)
P 		984.4
(3)
P 		914.6
(1.8)
P 		362
avr 631.4
(-3) 		867.1
(0.8) 		1003.2
(3) 		962.2
(2.3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 757.9
(2.3)
P 		780.3
(3)
P 		688
(-0)
P 		761.7
(2.4)
P 		596.6
(-3)
P 		635.9
(-1.7)
P 		184
B 679.3
(1)
P 		676.1
(0.9)
P 		762.9
(3)
P 		753.7
(2.8)
P 		623.6
(-0.3)
P 		512.5
(-3)
P 		250
C 769.2
(0.8)
P 		629.1
(-0.6)
P 		979.3
(3)
P 		803.9
(1.2)
P 		678.8
(-0.1)
P 		393.9
(-3)
P 		585
avr 735.5
(1.5) 		695.2
(0.7) 		810.1
(3) 		773.1
(2.3) 		633
(-0.6) 		514.1
(-3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 237
(0.8)
P 		182.7
(-1.5)
P 		287.5
(3)
P 		147.6
(-3)
P 		140
B 197.9
(-3)
P 		226.2
(3)
P 		214.5
(0.5)
P 		205.3
(-1.4)
P 		28
C 206.1
(-1.4)
P 		242.5
(-0.2)
P 		343.1
(3)
P 		154.2
(-3)
P 		189
avr 213.7
(-0.6) 		217.1
(-0.4) 		281.7
(3) 		169
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 139.7
(-3)
P 		277.5
(3)
P 		149.8
(-2.6)
P 		193.2
(-0.7)
P 		180
(-1.2)
P 		154.8
(-2.3)
P 		138
B 236.4
(1.5)
P 		225.1
(0.5)
P 		185.3
(-3)
P 		199.6
(-1.7)
P 		253.3
(3)
P 		191.1
(-2.5)
P 		68
C 285.1
(3)
P 		192
(-0.6)
P 		249.3
(1.6)
P 		161.7
(-1.8)
P 		219.6
(0.4)
P 		131.9
(-3)
P 		153
avr 220.4
(2.1) 		231.5
(3) 		194.8
(-0) 		184.8
(-0.9) 		217.6
(1.8) 		159.3
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174924_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22358
Sequence Type Exemplar sequence
Representative Public ID CEK074AYR NCBI
Target Description CEK074AYR_rc /REP_DB=TREMBL Accession /GB=D71350 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk74a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029651(11), NM_001029652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029651 NCBI Caenorhabditis elegans R03A10.4a (R03A10.4) mRNA, complete cds. 11/11 None
NM_001029652 NCBI Caenorhabditis elegans R03A10.4b (R03A10.4) mRNA, complete cds. 11/11 None
SNAP00000023411 ENSEMBL cdna:SNAP chromosome:CEL140:X:15441719:15443410:1 11/11 None
GENEFINDER00000023415 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15441719:15443410:1 11/11 None
R03A10.4a ENSEMBL cdna:known chromosome:CEL140:X:15441647:15443558:1 gene:R03A10.4 11/11 None
R03A10.4b ENSEMBL cdna:known chromosome:CEL140:X:15441718:15443410:1 gene:R03A10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15443113-15443515(+) 100.0 100.0
Public Domain and Genome References
Ensembl R03A10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93673 Hypothetical protein R03A10.4a [Caenorhabditis elegans] ref|NP_001024822.1| R03A10.4a [Caenorhabditis elegans] 0.0
blast CAI46593 Hypothetical protein R03A10.4b [Caenorhabditis elegans] ref|NP_001024823.1| R03A10.4b [Caenorhabditis elegans] 0.0
blast CAE63314 Hypothetical protein CBG07704 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec 1A11_CUCMA (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 1.1E-22
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 1.1E-22
Sequence
Target Sequence 
>C. ELEGANS:174924_S_AT
aggaaggcatcaatctgcccactgaagaagacccagatgactttgtcttctctagatggc
tttgtcgcgagaagaagcttgcagtgatccctccatcagctttctactcggctcgtgaca
acaaattgaagaacagcaatatggtccgtctctgctacttcaagaaagacgaaactcttg
atgcagctgaagagattttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAGGCATCAATCTGCCCACTGA 700 53 15 Antisense
CAATCTGCCCACTGAAGAAGACCCA 561 179 25 Antisense
GACCCAGATGACTTTGTCTTCTCTA 10 383 44 Antisense
GACTTTGTCTTCTCTAGATGGCTTT 197 373 53 Antisense
TCTTCTCTAGATGGCTTTGTCGCGA 541 617 60 Antisense
GGCTTTGTCGCGAGAAGAAGCTTGC 171 533 72 Antisense
TTCTACTCGGCTCGTGACAACAAAT 191 689 116 Antisense
ACTCGGCTCGTGACAACAAATTGAA 484 99 120 Antisense
GAACAGCAATATGGTCCGTCTCTGC 570 351 145 Antisense
TCCGTCTCTGCTACTTCAAGAAAGA 436 595 159 Antisense
TTGATGCAGCTGAAGAGATTTTGAA 68 693 192 Antisense
Sequence Source Affymetrix Proprietary Database