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[174923_at]

Description CEK134F9R_rc /REP_DB=TREMBL Accession /GB=D65324 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 60      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 536
1 2 3 4 range
A 577.7
(1.1)
P 		337
(-3)
P 		449.3
(-1.1)
P 		690.7
(3)
P 		354
B 450.6
(-1.4)
P 		407.7
(-1.9)
P 		322.2
(-3)
P 		794.1
(3)
P 		472
C 485.6
(-0.6)
P 		270.3
(-3)
P 		472.1
(-0.7)
P 		806.5
(3)
P 		536
avr 504.6
(-0.7) 		338.3
(-3) 		414.5
(-1.9) 		763.8
(3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 504
1 2 3 4 5 6 range
A 692.5
(3)
P 		418.8
(-0.4)
P 		209.9
(-3)
P 		287.8
(-2)
P 		422.6
(-0.4)
P 		477.1
(0.3)
P 		483
B 589.5
(3)
P 		318.2
(-1.1)
P 		189
(-3)
P 		290.9
(-1.5)
P 		344.9
(-0.7)
P 		578.2
(2.8)
P 		401
C 581.1
(3)
P 		472.4
(0.9)
P 		263.5
(-3)
P 		322.7
(-1.9)
P 		368.1
(-1)
P 		378.3
(-0.8)
P 		318
avr 621
(3) 		403.1
(-0.3) 		220.8
(-3) 		300.5
(-1.8) 		378.5
(-0.6) 		477.9
(0.9) 		400
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 210.3
(3)
P 		73.2
(-3)
P 		117.4
(-1.1)
P 		101.1
(-1.8)
P 		137
B 143.7
(1.4)
P 		100.7
(-1.3)
P 		74.7
(-3)
P 		169.2
(3)
P 		95
C 160.7
(2.7)
P 		77.7
(-3)
P 		164.5
(3)
P 		136
(1)
P 		87
avr 171.6
(3) 		83.9
(-3) 		118.9
(-0.6) 		135.4
(0.5) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 127.7
(1.8)
P 		148.9
(3)
P 		45.7
(-3)
P 		73
(-1.4)
P 		127.5
(1.8)
P 		116.1
(1.1)
P 		103
B 205.1
(2.6)
P 		105.9
(-0.9)
P 		45.9
(-3)
P 		77.1
(-1.9)
P 		140.1
(0.3)
P 		215.6
(3)
P 		170
C 215.4
(3)
P 		144.1
(0.2)
P 		67.1
(-2.9)
P 		64.9
(-3)
P 		119.1
(-0.8)
P 		126.6
(-0.5)
P 		151
avr 182.7
(3) 		133
(0.7) 		52.9
(-3) 		71.7
(-2.1) 		128.9
(0.5) 		152.8
(1.6) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21344
Sequence Type Exemplar sequence
Representative Public ID CEK134F9R NCBI
Target Description CEK134F9R_rc /REP_DB=TREMBL Accession /GB=D65324 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk134f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49H3.5a ENSEMBL cdna:known chromosome:CEL140:IV:7910583:7915157:1 gene:C49H3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7914812-7915151(+) 100.0 100.0
Public Domain and Genome References
Ensembl C49H3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99894 Not-like (yeast ccr4/not complex component) protein 4, isoform a [Caenorhabditis elegans] ref|NP_741453.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-4) [Caenorhabditis elegans] 0.0
blast T34180 hypothetical protein C49H3.5 - Caenorhabditis elegans 0.0
blast CAE70907 Hypothetical protein CBG17704 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.3E-6
Sequence
Target Sequence 
>C. ELEGANS:174923_AT
ggcagttttcatgtgatttctttatttaagttgtaccctcaactaatctaagaatcaacg
tggtttctgtatttctttttcttttgaaagtttagtttattcaagtttttgtcgttacca
ttttctttcatacacgtatcacccagaatcttcacttctcctcgtttgagaacaggatga
cgggcgtttttaatcgtattcagtagaatttgcttttcttcttttaggcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAGTTTTCATGTGATTTCTTTAT 255 537 89 Antisense
TGTACCCTCAACTAATCTAAGAATC 621 559 120 Antisense
TCTAAGAATCAACGTGGTTTCTGTA 624 577 135 Antisense
TTGTCGTTACCATTTTCTTTCATAC 75 707 197 Antisense
ACCATTTTCTTTCATACACGTATCA 80 87 205 Antisense
TACACGTATCACCCAGAATCTTCAC 400 643 219 Antisense
CGTATCACCCAGAATCTTCACTTCT 444 247 223 Antisense
TCTTCACTTCTCCTCGTTTGAGAAC 9 617 237 Antisense
GTTTGAGAACAGGATGACGGGCGTT 472 451 252 Antisense
GATGACGGGCGTTTTTAATCGTATT 222 407 264 Antisense
ATTTGCTTTTCTTCTTTTAGGCGAT 422 15 296 Antisense
Sequence Source Affymetrix Proprietary Database