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[174922_at]

Description CEK012DZR_rc /REP_DB=TREMBL Accession /GB=D32380 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk12d12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 26      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_total > 26      4grp_total > 14      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 300.3
(0.4)
P 		145.8
(-2.4)
P 		113.9
(-3)
P 		441.6
(3)
P 		328
B 327.3
(3)
P 		135.3
(-1.9)
P 		93
(-3)
P 		264
(1.4)
P 		234
C 229.8
(1.2)
P 		143.8
(-2.7)
P 		136.6
(-3)
P 		270.4
(3)
P 		134
avr 285.8
(1.9) 		141.6
(-2.2) 		114.5
(-3) 		325.3
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 131.7
(3)
P 		118
(1.8)
P 		76
(-1.9)
P 		63.7
(-3)
A 		95.3
(-0.2)
P 		66.1
(-2.8)
P 		68
B 212.4
(3)
P 		158.9
(0.9)
P 		62.7
(-3)
P 		76.1
(-2.5)
P 		78.6
(-2.4)
P 		109
(-1.1)
P 		150
C 167.5
(3)
P 		159.4
(2.6)
P 		32.8
(-3)
A 		67.7
(-1.4)
P 		89.9
(-0.5)
P 		129.1
(1.3)
P 		135
avr 170.5
(3) 		145.4
(1.7) 		57.2
(-3) 		69.2
(-2.4) 		87.9
(-1.4) 		101.4
(-0.7) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 109.4
(3)
P 		31.6
(-2.9)
P 		29.8
(-3)
P 		64.6
(-0.4)
P 		80
B 104.4
(3)
P 		33.4
(-2.1)
P 		21.6
(-3)
P 		56.3
(-0.5)
P 		83
C 76.1
(3)
P 		41.4
(-3)
P 		47.6
(-1.9)
P 		45.6
(-2.3)
P 		35
avr 96.6
(3) 		35.5
(-2.8) 		33
(-3) 		55.5
(-0.9) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 24.3
(-1.1)
P 		42
(3)
P 		16.6
(-2.9)
P 		16.1
(-3)
A 		28.8
(-0.1)
P 		16.1
(-3)
P 		26
B 73.9
(3)
P 		52.9
(0.9)
P 		15.2
(-3)
P 		20.2
(-2.5)
P 		31.9
(-1.3)
P 		40.7
(-0.4)
P 		59
C 62.1
(3)
P 		48.6
(1.5)
P 		8.3
(-3)
A 		13.6
(-2.4)
P 		29.1
(-0.7)
P 		43.2
(0.9)
P 		54
avr 53.4
(3) 		47.8
(2.2) 		13.4
(-3) 		16.6
(-2.5) 		29.9
(-0.5) 		33.3
(-0) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21340
Sequence Type Exemplar sequence
Representative Public ID CEK012DZR NCBI
Target Description CEK012DZR_rc /REP_DB=TREMBL Accession /GB=D32380 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk12d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070482(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070482 NCBI Caenorhabditis elegans Y105C5A.15 (Y105C5A.15) mRNA, complete cds. 10/11 None
Y105C5A.15 ENSEMBL cdna:known chromosome:CEL140:IV:15710938:15722229:1 gene:Y105C5A.15 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15721895-15722309(+) 84.06 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.15
Entrez Gene 178442 Entrez gene
SwissProt Q9U323 EMBL-EBI
WormBase CE35192 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60302 Hypothetical protein Y105C5A.15 [Caenorhabditis elegans] ref|NP_502883.2| Y105C5A.15 [Caenorhabditis elegans] 0.0
blast T31575 hypothetical protein Y105C5A.r - Caenorhabditis elegans 0.0
blast CAE68072 Hypothetical protein CBG13701 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174922_AT
tttcccggtttcactggtaatctattgatttattatttttatttaaaaacatatttttct
acatcaatttatttcagctaattcaatctccaaacatatcagaaacatttgaattttccc
gccatttctctcacttgacctgtgaaatttttgagtttttagaacattgattatctcggt
ttcaatatttaagtcccggctagatttttcttatttcattattatttcttgatttctaat
attttttgaagttatattattgttgaaaaatgcaatgactattcggaatgaaattacaat
ctggaacgacgattaattcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCGGTTTCACTGGTAATCTAT 107 669 60 Antisense
TTTCTACATCAATTTATTTCAGCTA 52 673 115 Antisense
ATTTCAGCTAATTCAATCTCCAAAC 86 17 130 Antisense
GCTAATTCAATCTCCAAACATATCA 86 303 136 Antisense
CCATTTCTCTCACTTGACCTGTGAA 264 271 181 Antisense
TGACCTGTGAAATTTTTGAGTTTTT 33 571 195 Antisense
TAGAACATTGATTATCTCGGTTTCA 320 653 219 Antisense
GTTTCAATATTTAAGTCCCGGCTAG 77 447 238 Antisense
TCCCGGCTAGATTTTTCTTATTTCA 597 597 253 Antisense
AAATGCAATGACTATTCGGAATGAA 3 119 327 Antisense
ATCTGGAACGACGATTAATTCAGCA 40 35 358 Antisense
Sequence Source Affymetrix Proprietary Database