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[174921_s_at]

Description CEK115G2R_rc /REP_DB=TREMBL Accession /GB=D73218 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk115g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 96      6grp_total > 88      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 666.2
(-3)
P 		804.6
(0.4)
P 		827.4
(1)
P 		908.2
(3)
P 		242
B 918.2
(1.4)
P 		711.9
(-3)
P 		761.9
(-1.9)
P 		993
(3)
P 		281
C 820.9
(1.9)
P 		667
(-2.1)
P 		630.9
(-3)
P 		864
(3)
P 		233
avr 801.8
(-0.7) 		727.8
(-3) 		740.1
(-2.6) 		921.7
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 767
1 2 3 4 5 6 range
A 632.4
(-2.2)
P 		595.3
(-3)
P 		858.3
(2.5)
P 		806.3
(1.4)
P 		881.5
(3)
P 		802.9
(1.4)
P 		286
B 834.3
(-0.7)
P 		698.7
(-2.7)
P 		768.2
(-1.7)
P 		676.7
(-3)
P 		1084.6
(3)
P 		1026.6
(2.1)
P 		408
C 664.8
(-2.5)
P 		801.6
(-1.5)
P 		882.4
(-0.8)
P 		607.1
(-3)
P 		716.2
(-2.1)
P 		1362.2
(3)
P 		755
avr 710.5
(-2.8) 		698.5
(-3) 		836.3
(-0.7) 		696.7
(-3) 		894.1
(0.2) 		1063.9
(3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 242.6
(3)
P 		174.7
(-0.7)
P 		216.3
(1.6)
P 		132.9
(-3)
P 		110
B 292.8
(3)
P 		175.8
(-3)
P 		176.6
(-3)
P 		211.6
(-1.2)
P 		117
C 271.8
(3)
P 		191.8
(-0.8)
P 		219.9
(0.5)
P 		145.7
(-3)
P 		126
avr 269.1
(3) 		180.8
(-2) 		204.3
(-0.7) 		163.4
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 116.6
(-3)
P 		211.7
(0.8)
P 		186.9
(-0.2)
P 		204.5
(0.5)
P 		266
(3)
P 		195.5
(0.2)
P 		149
B 290.3
(-0.5)
P 		232.6
(-1.8)
P 		186.6
(-2.8)
P 		179.2
(-3)
P 		440.7
(3)
P 		382.8
(1.7)
P 		262
C 246.4
(-0.8)
P 		244.6
(-0.8)
P 		224.6
(-1.2)
P 		122.1
(-3)
P 		231.8
(-1)
P 		456
(3)
P 		334
avr 217.8
(-1.3) 		229.6
(-0.9) 		199.4
(-2) 		168.6
(-3) 		312.8
(1.9) 		344.8
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174921_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21330
Sequence Type Exemplar sequence
Representative Public ID CEK115G2R NCBI
Target Description CEK115G2R_rc /REP_DB=TREMBL Accession /GB=D73218 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk115g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070598 NCBI Caenorhabditis elegans T06A10.4 (T06A10.4) mRNA, complete cds. 11/11 A 
SNAP00000020714 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16863827:16865284:1 11/11 None
GENEFINDER00000020722 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16864708:16865284:1 11/11 None
T06A10.4 ENSEMBL cdna:known chromosome:CEL140:IV:16862355:16865416:1 gene:T06A10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16865010-16865412(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A10.4
Entrez Gene 178470 Entrez gene
SwissProt Q965G8 EMBL-EBI
WormBase CE19561 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK73894 Hypothetical protein T06A10.4 [Caenorhabditis elegans] ref|NP_502999.1| T06A10.4 [Caenorhabditis elegans] 1.0E-130
blast AAK73894 Hypothetical protein T06A10.4 [Caenorhabditis elegans] ref|NP_502999.1| T06A10.4 [Caenorhabditis elegans] 1.0E-87
blast CAE68062 Hypothetical protein CBG13684 [Caenorhabditis briggsae] 2.0E-31
blast CAE68062 Hypothetical protein CBG13684 [Caenorhabditis briggsae] 1.0E-18
blast CAE58905 Hypothetical protein CBG02160 [Caenorhabditis briggsae] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:174921_S_AT
aaatgtactgctggtgtcaactggacgacacaatgatcgaatgcgagaatccgggctgca
agtacggatggttccacttcacatgcatcggaatgatcactgctccagccggcgactggt
attgcaccaatgagtgccgtgcacagggtctcgcggcggttgcagaggctccgcagaagg
ctccacaacgaaagggattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTACTGCTGGTGTCAACTGGA 457 119 14 Antisense
CGAATGCGAGAATCCGGGCTGCAAG 43 253 51 Antisense
GCGAGAATCCGGGCTGCAAGTACGG 522 289 56 Antisense
AGTACGGATGGTTCCACTTCACATG 431 61 74 Antisense
GGTTCCACTTCACATGCATCGGAAT 630 507 83 Antisense
GCATCGGAATGATCACTGCTCCAGC 448 309 98 Antisense
CTCCAGCCGGCGACTGGTATTGCAC 10 235 116 Antisense
GGTATTGCACCAATGAGTGCCGTGC 450 505 131 Antisense
AATGAGTGCCGTGCACAGGGTCTCG 86 165 142 Antisense
GCGGTTGCAGAGGCTCCGCAGAAGG 555 293 169 Antisense
GAAGGCTCCACAACGAAAGGGATTG 492 333 189 Antisense
Sequence Source Affymetrix Proprietary Database