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[174920_at]

Description CEK130A9R_rc /REP_DB=TREMBL Accession /GB=D65038 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130a9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 35      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 90.2
(-2.4)
P 		97.6
(-1.6)
P 		84.8
(-3)
P 		140.3
(3)
P 		56
B 132.4
(2.5)
P 		136.5
(2.9)
P 		81.7
(-3)
P 		137.2
(3)
A 		56
C 161.3
(3)
P 		125.5
(-0.4)
P 		107.3
(-2.2)
P 		98.6
(-3)
P 		63
avr 128
(3) 		119.9
(1.7) 		91.3
(-3) 		125.4
(2.6) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 149.4
(2.4)
P 		159.6
(3)
P 		129.2
(1.2)
P 		66.4
(-2.5)
P 		57.8
(-3)
P 		116.3
(0.4)
P 		102
B 169.9
(3)
P 		116.6
(-0.7)
P 		114.8
(-0.8)
P 		104.9
(-1.5)
P 		82.8
(-3)
P 		113.6
(-0.9)
P 		87
C 195.1
(3)
P 		186.3
(2.5)
P 		142.6
(0.1)
P 		97.6
(-2.4)
P 		86.7
(-3)
P 		95.1
(-2.5)
P 		108
avr 171.5
(3) 		154.2
(1.9) 		128.9
(0.3) 		89.6
(-2.1) 		75.8
(-3) 		108.3
(-1) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 32.9
(3)
P 		21.2
(-2.7)
P 		22.2
(-2.2)
P 		20.5
(-3)
P 		12
B 42.2
(3)
P 		33.7
(0.8)
P 		18.9
(-3)
P 		29.2
(-0.3)
A 		23
C 53.4
(3)
P 		36.1
(0.2)
P 		37.4
(0.4)
P 		16.6
(-3)
P 		37
avr 42.8
(3) 		30.3
(-0.6) 		26.2
(-1.8) 		22.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 27.5
(-1.4)
P 		56.8
(3)
P 		28.1
(-1.3)
P 		16.8
(-3)
P 		17.4
(-2.9)
P 		28.3
(-1.3)
P 		40
B 59.1
(3)
P 		38.8
(-0.9)
P 		27.9
(-3)
P 		27.8
(-3)
P 		33.6
(-1.9)
P 		42.3
(-0.2)
P 		31
C 72.3
(3)
P 		56.8
(1.2)
P 		36.3
(-1.1)
P 		19.6
(-3)
P 		28.1
(-2)
P 		31.8
(-1.6)
P 		53
avr 53
(3) 		50.8
(2.6) 		30.8
(-1.2) 		21.4
(-3) 		26.4
(-2.1) 		34.1
(-0.6) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174920_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21333
Sequence Type Exemplar sequence
Representative Public ID CEK130A9R NCBI
Target Description CEK130A9R_rc /REP_DB=TREMBL Accession /GB=D65038 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130a9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182301 NCBI Caenorhabditis elegans Y57G11C.37 (Y57G11C.37) mRNA, complete cds. 11/11 None
Y57G11C.37 ENSEMBL cdna:known chromosome:CEL140:IV:14664213:14675104:1 gene:Y57G11C.37 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003451 7/11 Cross Hyb Matching Probes None
GENEFINDER00000003575 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14674773-14675089(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.37
Entrez Gene 178395 Entrez gene
SwissProt Q8I4C3 EMBL-EBI
WormBase CE35694 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23680.1.S1_S_AT similar to CG15270-PA, isoform A cfa
CANINE_2:CFAAFFX.23682.1.S1_AT similar to CG15270-PA, isoform A cfa
DROSOPHILA_2:1627297_AT dm
DROSGENOME1:144284_AT dm
CHICKEN:GGAAFFX.6774.1.S1_AT similar to KIAA1623 protein gga
U133_X3P:HS2.421680.1.S1_3P_A_AT transmembrane protein 16H hs
HG-U133_PLUS_2:1563549_A_AT transmembrane protein 16H hs
RAE230B:1396653_AT similar to mKIAA1623 protein rn
RAT230_2:1396653_AT similar to mKIAA1623 protein rn
RAE230B:1384856_AT similar to mKIAA1623 protein rn
RAT230_2:1384856_AT similar to mKIAA1623 protein rn
Protein Similarities
Method ID Description E-Value
blast CAD56259 Hypothetical protein Y57G11C.37 [Caenorhabditis elegans] ref|NP_872101.2| Y57G11C.37 [Caenorhabditis elegans] 0.0
blast CAE73931 Hypothetical protein CBG21548 [Caenorhabditis briggsae] 0.0
blast CAE73930 Hypothetical protein CBG21547 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR007632 EMBL-EBI Protein of unknown function DUF590 2.1E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872101.2 7 188-210,225-247,309-331,346-365,391-413,590-612,643-665
Y57G11C.37 7 188-210,225-247,309-331,346-365,391-413,590-612,643-665
Sequence
Target Sequence 
>C. ELEGANS:174920_AT
ataggccaacaatcccaaaatgagccaattagtccgtcggagagcacttcaagatttaat
cgattagatcaaattaatcgatcgaaacgaagaagtatcacaccaatggttcggttatcc
agtttcacaagaaaaccaagaaaagaagcacaagataattgtattgattgatggattttt
ctagtctttttcatgtacaacgggatacaacttctcattttttgtctataaataagtacc
acttttattgtaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGGCCAACAATCCCAAAATGAGC 423 1 27 Antisense
AAATGAGCCAATTAGTCCGTCGGAG 655 119 44 Antisense
CAATTAGTCCGTCGGAGAGCACTTC 214 181 52 Antisense
GAGAGCACTTCAAGATTTAATCGAT 370 393 66 Antisense
GAAACGAAGAAGTATCACACCAATG 475 357 110 Antisense
TCACACCAATGGTTCGGTTATCCAG 539 627 124 Antisense
GGTTCGGTTATCCAGTTTCACAAGA 611 501 134 Antisense
GGATTTTTCTAGTCTTTTTCATGTA 521 509 199 Antisense
TAGTCTTTTTCATGTACAACGGGAT 563 199 208 Antisense
ACAACGGGATACAACTTCTCATTTT 99 111 223 Antisense
TAAGTACCACTTTTATTGTAATTCA 572 635 259 Antisense
Sequence Source Affymetrix Proprietary Database